Pairwise Alignments

Query, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

Subject, 872 a.a., DNA topoisomerase I (RefSeq) from Shewanella amazonensis SB2B

 Score =  117 bits (292), Expect = 3e-30
 Identities = 158/632 (25%), Positives = 265/632 (41%), Gaps = 65/632 (10%)

Query: 4   LFIAEKPSLARAIADALPKPH--KKEQGCIR------CANGDIVTWCIGHL--LEQVEPD 53
           L I E P+ A+ I   L K    K   G IR       A G   T     +  +   E  
Sbjct: 5   LVIVESPAKAKTINKYLGKEFIVKSSVGHIRDLPTSSAAEGKASTKSAAEVRKMNPEEKA 64

Query: 54  AYD-ERYKKWNMADLPIIPEQ-WQLRPRKSSSQQLTV--VRKLLKEATQIIHAGDPDREG 109
            Y  ++ K+  +A + + PE  WQ   +    ++  V  ++ L   A QI  A D DREG
Sbjct: 65  KYKAQKDKQALVARMGVDPEHGWQANYQVLPGKEKVVKELQSLASSADQIYLATDLDREG 124

Query: 110 QLLVDEVIDYCKVPKSKKETVQRLLISDLNLSAVKRALQGLRSNREFIPLSVSALARSRA 169
           + +   + +     +S+    +R++ +++   A++ A    R       +  +  AR   
Sbjct: 125 EAIAWHLQEVIGGDESR---YKRVVFNEITKGAIQEAFS--RPTDLNTNMVNAQQARRFL 179

Query: 170 DWLYGMNMSRAYTLLGKKAGYQGVLSVGRVQTPVLGLVVRRDEEIEHFIPHDYFTLDALI 229
           D + G  +S    LL KK      LS GRVQ+  + LVV R+ EI+ F+P +++ + A +
Sbjct: 180 DRVVGFMVS---PLLWKKVARG--LSAGRVQSVAVRLVVEREAEIKAFVPEEFWDVHATL 234

Query: 230 PYQNGTEYFDIRARWKPSEACLPWQDEEGRVTNRKLVDNVASRIANQPATVTESEQDQTK 289
                 E     +R++ +EA  P    E             + +     TVT+ E   T 
Sbjct: 235 STPAAAELVMEVSRYR-NEAFEPVTQSEAMAA--------VNALEKAAFTVTDREDKATS 285

Query: 290 QAAPLPYSLSALQIDAAKRYNFSAQQVLDLCQSLYEKHKLITYPRSDCRYLPKEHLAQAP 349
                P+  S LQ  A+ R  F  ++ + L Q LYE    ITY R+D   L +E L    
Sbjct: 286 SKPSAPFITSTLQQAASTRLGFGVKKTMMLAQRLYEAGH-ITYMRTDSTNLSQEALE--- 341

Query: 350 DVVAAIANNAQEMVTAVNDADLSLRSKAWNDSKVDAHHAIIPTPKKASVNALSGHE---M 406
           +V A I          + ++ +   SK   +   +AH AI P+  K     L   E    
Sbjct: 342 NVRAHIEKEFGSKY--LPESPIRYGSK---EGAQEAHEAIRPSNVKVESATLIDMERDAQ 396

Query: 407 KVYQLIARQYLMQFYPAAIYAEAKLVFNIAGGIFIAKGRQLLSAGWKVLTGQQDEQEECV 466
           ++Y+LI RQ++      A+Y   ++          A GR L   GW  +     ++ E  
Sbjct: 397 RLYELIWRQFVACQMTPAVYDATRITAKAGDYELKASGRILKFDGWTRVQPALKKKNEED 456

Query: 467 DKVPPLPVGIVLQCREGEIKQRQTEPPRHFTEATLLQAMTGIARFVADKELKKILRETDG 526
           + +P + VG +L  +  + KQ  T+PP  ++EA+L+            KEL+K      G
Sbjct: 457 NTLPDVQVGDMLSLKALDPKQHFTKPPARYSEASLV------------KELEK-----RG 499

Query: 527 LGTEATRAGILDTLFKRGLLQRDNKLIKSTPAGRGLIHALP---SEATYPDMTAHWEHQL 583
           +G  +T A I+ T+  RG ++ +N+   +   G  +   L    SE    D TA  E  L
Sbjct: 500 IGRPSTYAAIISTIQDRGYVKVENRRFYAEKMGEIVTERLVESFSELMNYDFTAGMEQTL 559

Query: 584 QAIAEKGQAYQPFMQTLQGRLEQLIEQVQVAP 615
             +A+  + ++  +          +E+ +  P
Sbjct: 560 DDVAKGDKDWKGVLDGFYSGFTAKLEKAEAEP 591