Pairwise Alignments

Query, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

Subject, 915 a.a., DNA topoisomerase (NCBI) from Rhodospirillum rubrum S1H

 Score =  122 bits (306), Expect = 7e-32
 Identities = 150/604 (24%), Positives = 257/604 (42%), Gaps = 88/604 (14%)

Query: 63  NMADLPIIPEQWQLRPRKS----------SSQQLTVVRKLLKEATQIIHAGDPDREGQLL 112
           ++ DLP  P+   +RP +           S + +  + + LK A  ++ A DPDREG+ +
Sbjct: 31  HIRDLP--PKDGSVRPDEGFAMDWEIDAKSEKHVKDITQALKSADGLLLATDPDREGEAI 88

Query: 113 VDEVIDYCKVPKSKK-ETVQRLLISDLNLSAVKRALQGLRSNREFIPLSVSALARSRADW 171
              V D  +  K+   + VQR+  + +  SAV+ AL+  R      PL  + LAR   D+
Sbjct: 89  SWHVRDVLEKRKALVGKQVQRITFNAITRSAVEEALRNPRDLDT--PLVEAYLARRALDY 146

Query: 172 LYGMNMSRAYTLLGKKAGYQGVLSVGRVQTPVLGLVVRRDEEIEHFIPHDYFTLDALIPY 231
           L G  +S    +L +K    G  S GRVQ+  L L+  R++E+E F+  +Y+T+DA++  
Sbjct: 147 LVGFTLS---PVLWRKL--PGSRSAGRVQSVALRLICEREQEVERFVSREYWTVDAILAS 201

Query: 232 QNGTEYFDIRARWKPSEACLPWQDEEGRVTNRKLVDNVASRIANQPATVTESEQDQTKQA 291
             G  +   RAR    +     + ++  + +         RI      V   E+ Q ++ 
Sbjct: 202 PQGQIF---RARLSQLDG---QKLDKFGLPDETTALAALERIKAATLRVESVERKQARRN 255

Query: 292 APLPYSLSALQIDAAKRYNFSAQQVLDLCQSLY-------EKHKLITYPRSDCRYLPKEH 344
              P++ S +Q +A+++  FSA+Q + + Q LY       E   LITY R+D   +  E 
Sbjct: 256 PAAPFTTSTIQQEASRKLYFSARQTMQVAQKLYEGVDLGGETVGLITYMRTDGVSIAPEA 315

Query: 345 LAQAPDVVAAIANNAQEMVTAVNDADLSLRSKAWNDSKVDAHHAIIPTPKKASVNA---- 400
           +    D++ A    A      + +     ++KA N    +AH AI PT    +  +    
Sbjct: 316 VFATRDLIGAEFGAAY-----LPEQPRVYKTKAKNAQ--EAHEAIRPTDVARTPQSVAPY 368

Query: 401 LSGHEMKVYQLIARQYLMQFYPAAIY---------AEAKLVFNIAGGIFIAKGRQLLSAG 451
           L+  + K+Y+L+ ++ +     +AI           EAK+V +  G +    G       
Sbjct: 369 LTAEQRKLYELVWKRTVASQMASAILDQVAVDIADPEAKVVLHATGSVIQFDG------F 422

Query: 452 WKVLTGQQDEQEECVDK---------VPPLPVGIVLQCREGEIKQRQTEPPRHFTEATLL 502
            KV     D++ E             +PPL  G  ++  + +  Q  T+PP  +TEA+L+
Sbjct: 423 LKVYREDFDDRPESSPDGAGEDENRLLPPLREGDGVKREDVKADQHFTQPPPRYTEASLV 482

Query: 503 QAMTGIARFVADKELKKILRETDGLGTEATRAGILDTLFKRGLLQRDNKLIKSTPAGR-- 560
           + M                 E  G+G  +T A IL  L  R  ++ D +       GR  
Sbjct: 483 KRM-----------------EELGIGRPSTYASILSVLQDREYVRLDARRFIPEDRGRLV 525

Query: 561 -GLIHALPSEATYPDMTAHWEHQLQAIAEKGQAYQPFMQTLQGRLEQLIEQVQVAPVPVS 619
              +    S       TA  E+QL  I++    ++  ++      +  IE      V   
Sbjct: 526 TAFLENFFSRYVQYSFTADLENQLDEISDGKLGWKTVLERFWMDFKAAIEGTATLRVSEV 585

Query: 620 LQAL 623
           L AL
Sbjct: 586 LDAL 589