Pairwise Alignments

Query, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

Subject, 877 a.a., DNA topoisomerase III from Ralstonia solanacearum GMI1000

 Score =  311 bits (797), Expect = 8e-89
 Identities = 203/624 (32%), Positives = 334/624 (53%), Gaps = 29/624 (4%)

Query: 4   LFIAEKPSLARAIADALPKPHKKEQGCIRCANGDIVTWCIGHLLEQVEPDAYDERYKKWN 63
           L IAEKPS+A  IA AL    K ++     ++  +++  +GHL+E   PD Y+ +  KW+
Sbjct: 5   LIIAEKPSVAADIARALGGFTKHDE--YYESDDHVLSSAVGHLVEIAAPDEYEVKRGKWS 62

Query: 64  MADLPIIPEQWQLRPRKSSSQQLTVVRKLLK--EATQIIHAGDPDREGQLLVDEVIDYCK 121
            A LP+IP  + LRP   S  +L V+ +L+K  + T +I+A D  REG+L+   +  +  
Sbjct: 63  FAHLPVIPPHFDLRPIAKSESRLKVLTRLIKRKDVTSLINACDAGREGELIFRLIAQHAN 122

Query: 122 VPKSKKETVQRLLISDLNLSAVKRALQGLRSNREFIPLSVSALARSRADWLYGMNMSRAY 181
                K  +QRL +  +   A++     LRS+ E +PL+ +A  RS ADWL G+N +RA 
Sbjct: 123 T----KLPIQRLWLQSMTPQAIRDGFAQLRSDNEMLPLADAARCRSEADWLVGINGTRAM 178

Query: 182 TLLGKKAGYQGVLSVGRVQTPVLGLVVRRDEEIEHFIPHDYFTLDALIPYQNGT---EYF 238
           T    K G   + +VGRVQTP L +VV R+E+I+ F+P DY+ + A      G     +F
Sbjct: 179 TAFNSKGGGFFLTTVGRVQTPTLSIVVEREEKIKRFVPRDYWEVRAEFIAAAGLYEGRWF 238

Query: 239 DIRARWKPSEACLPWQDEEGRVTNRKLVDNVASRIANQPATVTESEQDQTKQAAPLPYSL 298
           D   ++K SE     +  E R+ +     ++ +   ++P  VTE  +  T Q +P  + L
Sbjct: 239 D--PKFKKSE--FDPEQRESRLWSEAEALSIVAACRDKPGMVTEESKPST-QMSPALFDL 293

Query: 299 SALQIDAAKRYNFSAQQVLDLCQSLYEKHKLITYPRSDCRYLPKEHLAQAPDVVAAIANN 358
           ++LQ +A  R+ FSA+  L L Q+LYEKHK++TYPR+D R LP+++L      +  +A++
Sbjct: 294 TSLQREANSRFGFSAKNTLGLAQALYEKHKVLTYPRTDSRALPEDYLGTVRQTLDMLADS 353

Query: 359 AQEMVTAVNDADLSL----RSKAWNDSKVDAHHAIIPTPKKASVNALSGHEMKVYQLIAR 414
           +   +        S       + +++SK+  H AIIPT +  +   LS  E K+Y L+ R
Sbjct: 354 SHNYLPHAKKILASQWVKPNKRIFDNSKISDHFAIIPTLQ--APKNLSEPEQKLYDLVVR 411

Query: 415 QYLMQFYPAAIYAEAKLVFNIAGGIFIAKGRQLLSAGWKVLTGQQDEQEECVDKVPPLPV 474
           ++L  F+PAA Y     V  +AG  F  +G+ L++ GW V+ G++ + ++  +    +PV
Sbjct: 412 RFLAVFFPAAEYLVTTRVTEVAGHHFKTEGKVLVNPGWLVVYGRESQSKDDKENGNLVPV 471

Query: 475 GIVLQCREGEIK--QRQTEPPRHFTEATLLQAMTGIARFVADKELKKILRETDGLGTEAT 532
               + +  +++     T+PP  + EATLL AM G  + V D  L++ +    GLGT AT
Sbjct: 472 AKAEKVKTDKVEPVSLTTKPPARYNEATLLSAMEGAGKLVDDDALREAM-AGKGLGTPAT 530

Query: 533 RAGILDTLFKRGLLQRDNKLIKSTPAGRGLIHAL----PSEATYPDMTAHWEHQLQAIAE 588
           RA I++ L     L R+ + +  T     L+  L      E T  ++T  WEH+L  I  
Sbjct: 531 RAAIIEGLLTEKYLLREGRELIPTAKAFQLMTLLRGLGVEELTQAELTGEWEHKLAQIER 590

Query: 589 KGQAYQPFMQTLQGRLEQLIEQVQ 612
              A   FM+ +    +Q++++ +
Sbjct: 591 GRLARDEFMREIAQMTQQIVKRAK 614