Pairwise Alignments

Query, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

Subject, 900 a.a., DNA topoisomerase TopA from Phaeobacter inhibens DSM 17395

 Score =  108 bits (269), Expect = 1e-27
 Identities = 138/549 (25%), Positives = 237/549 (43%), Gaps = 71/549 (12%)

Query: 82  SSQQLTVVRKLLKEATQIIHAGDPDREGQLLVDEVIDYCKVPKS-KKET-VQRLLISDLN 139
           S + +  +   LK+   +I A DPDREG+ +   + +     +S KK+T V R+  + + 
Sbjct: 58  SRKHVKAIADALKDDNALILATDPDREGEAISWHLQEALTKRRSIKKDTAVSRVTFNAIT 117

Query: 140 LSAVKRALQGLRSNREFIPLSVSALARSRADWLYGMNMSRAYTLLGKKAGYQGVLSVGRV 199
             AV  A++  R  +  +PL  + LAR   D+L G N+S    +L +K    G  S GRV
Sbjct: 118 KEAVTEAMKNPR--QVDLPLVEAYLARRALDYLVGFNLS---PVLWRKL--PGARSAGRV 170

Query: 200 QTPVLGLVVRRDEEIEHFIPHDYFTLDALIPYQNGTEYFDIRARWKPSEACLPWQDEEGR 259
           Q+  L L+V R+ EIE F P +Y+++ A +    G E F+ R      +       ++  
Sbjct: 171 QSVCLRLIVEREMEIEAFKPQEYWSVKASLATPRGQE-FEARLTVLGGDKL-----DKYA 224

Query: 260 VTNRKLVDNVASRIANQPATVTESEQDQTKQAAPLPYSLSALQIDAAKRYNFSAQQVLDL 319
           + N    +     +A++  TV   E     +    P+  S LQ +A++++   A+Q ++ 
Sbjct: 225 LANSTAAELAVQAVASRALTVQSVEAKPASRNPSAPFMTSTLQQEASRKFGMGAKQCMNA 284

Query: 320 CQSLYEKHKLITYPRSDCRYLPKEHLAQAPDVVAAIANNAQEMVTAVNDADLSLRSKAWN 379
            Q LYE    ITY R+D   +  E + +A    A IAN  +     V  +    ++KA N
Sbjct: 285 AQRLYEA-GYITYMRTDGIDMAPEAVQEAR---AEIAN--RYGAEYVPGSPRIYKNKAKN 338

Query: 380 DSKVDAHHAIIPTPKKASVNALSGHE---MKVYQLIARQYLMQFYPAAIYAEAKLVFNIA 436
               +AH  I PT       +L   E    K+Y LI ++ L      A      +     
Sbjct: 339 AQ--EAHECIRPTEMGRDAKSLKVSEDDQRKLYDLIWKRTLACQMEGARLERTTVDIGSN 396

Query: 437 GG--IFIAKGRQLLSAGWKVL--TGQQDEQEECVDKVPPLPVG--------IVLQCREGE 484
            G  +  A G+ +L  G+  +   G+ D  ++   ++P +  G        +  Q  + +
Sbjct: 397 DGQVVLRATGQVMLFDGFLRVYEEGRDDVVDDDDKRLPQIMQGESLKFAASLAAQAEKAD 456

Query: 485 I-------------KQRQTEPPRHFTEATLLQAMTGIARFVADKELKKILRETDGLGTEA 531
                          Q  T+PP  FTEATL++ M                 E  G+G  +
Sbjct: 457 TGGAILSDDKAVLGLQHHTQPPPRFTEATLVKRM-----------------EELGIGRPS 499

Query: 532 TRAGILDTLFKRGLLQRDNKLIKSTPAGRGL-IHALPSEATYP--DMTAHWEHQLQAIAE 588
           T A ++ T+  R  +++D   +     GR + I  L    TY   + TA+ E +L  ++ 
Sbjct: 500 TYASVITTIQDREYVRKDKNRLFPEDKGRIVTIFLLNFFRTYVGYEFTANLEGELDDVSA 559

Query: 589 KGQAYQPFM 597
             + Y+  +
Sbjct: 560 GDRDYKDLL 568