Pairwise Alignments

Query, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

Subject, 670 a.a., DNA topoisomerase III (RefSeq) from Shewanella loihica PV-4

 Score =  716 bits (1849), Expect = 0.0
 Identities = 371/636 (58%), Positives = 462/636 (72%), Gaps = 11/636 (1%)

Query: 4   LFIAEKPSLARAIADALPKPHKKEQGCIRCANGDIVTWCIGHLLEQVEPDAYDERYKKWN 63
           L+IAEKPSL RAIAD LPKPHKK +G I  ANGD V+WCIGHLLEQ EPD+YD  +K W+
Sbjct: 3   LYIAEKPSLGRAIADVLPKPHKKGEGYITAANGDTVSWCIGHLLEQAEPDSYDPAFKSWS 62

Query: 64  MADLPIIPEQWQLRPRKSSSQQLTVVRKLLKEATQIIHAGDPDREGQLLVDEVIDYCKVP 123
              LPI+P+QW++ P+  +  QL+V+RKL+K+A+Q+++AGDPDREGQLLVDEVI Y  V 
Sbjct: 63  FDHLPIVPQQWKMTPKSKTRGQLSVLRKLVKQASQLVNAGDPDREGQLLVDEVIAYLGVK 122

Query: 124 KSKKETVQRLLISDLNLSAVKRALQGLRSNREFIPLSVSALARSRADWLYGMNMSRAYTL 183
             K E  QRLL+SDLN  AVKRAL  LRSNREFIPLS SALARSRADWLYGMNM+RAYTL
Sbjct: 123 GDKLEQTQRLLVSDLNPQAVKRALGQLRSNREFIPLSTSALARSRADWLYGMNMTRAYTL 182

Query: 184 LGKKAGYQGVLSVGRVQTPVLGLVVRRDEEIEHFIPHDYFTLDALIPYQNGTEYFDIRAR 243
            G+K GYQGVLSVGRVQTP+LGLVVRRDE IEHF+   ++ + A +  Q   E    +A+
Sbjct: 183 QGRKVGYQGVLSVGRVQTPLLGLVVRRDEAIEHFVSKPFYEVLANLYTQ---EQAHFKAK 239

Query: 244 WKPSEACLPWQDEEGRVTNRKLVDNVASRIANQPATVTESEQDQTKQAAPLPYSLSALQI 303
           W+PSEAC P+ DEEGRV +R+L +NV  RI  QPA VT+ +    +Q  PLPY+LS+LQI
Sbjct: 240 WQPSEACQPYMDEEGRVLSRRLAENVVGRITEQPAKVTDLQAKDKQQGQPLPYNLSSLQI 299

Query: 304 DAAKRYNFSAQQVLDLCQSLYEKHKLITYPRSDCRYLPKEHLAQAPDVVAAIANNAQEMV 363
           DAAKR+  SA+ VLD CQSLYEKHKLITYPRSD RYLPKE LA AP V+ A+   A E+ 
Sbjct: 300 DAAKRFGMSAKTVLDTCQSLYEKHKLITYPRSDSRYLPKEQLALAPSVIGAVLKGAGELT 359

Query: 364 TAVNDADLSLRSKAWNDSKVDAHHAIIPTPKKASVNALSGHEMKVYQLIARQYLMQFYPA 423
                 DL + SKAWND+KVDAHHAI+PT K A+++AL+  E ++Y  +ARQYL QFYP 
Sbjct: 360 AQCAAPDLKIVSKAWNDAKVDAHHAIVPTEKVANLSALTQAEKQIYLQLARQYLAQFYPV 419

Query: 424 AIYAEAKLVFNIAGGIFIAKGRQLLSAGWKVLTGQQD------EQEECVDKVPPLPVGIV 477
             Y E ++   IAGG F  K +Q ++ GWK L  ++       E +E + ++PPL  G +
Sbjct: 420 YRYHETQVEVEIAGGHFHTKAKQEIALGWKQLFPKRSDDKTDGEGDEALAQLPPLHKGQM 479

Query: 478 LQCREGEIKQRQTEPPRHFTEATLLQAMTGIARFVADKELKKILRETDGLGTEATRAGIL 537
           L   +GE+ ++QT+PP+ FT+ATLL AMTGI+R+V + E++KIL+ETDGLGTEATRAGI+
Sbjct: 480 LHSGQGELIEKQTQPPKAFTDATLLSAMTGISRYVTNPEIRKILKETDGLGTEATRAGII 539

Query: 538 DTLFKRGLLQRDNKLIKSTPAGRGLIHALPSEATYPDMTAHWEHQLQAIAEKGQAYQPFM 597
           + LFKRG L R  K I STP GRGLI++LP  AT PDMTA WE  L AI+ K   Y  FM
Sbjct: 540 ELLFKRGFLARQGKSIVSTPVGRGLINSLPESATTPDMTALWESHLDAISRKEAKYLSFM 599

Query: 598 QTLQGRLEQLIEQVQVAPVPVSLQALPAVSKPAFKR 633
             L   L  LI Q   A +P +LQ + A  K +FK+
Sbjct: 600 APLVESLNGLIMQAG-AQLPKALQGVEA-PKRSFKK 633