Pairwise Alignments

Query, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

Subject, 898 a.a., DNA topoisomerase I (RefSeq) from Shewanella loihica PV-4

 Score =  120 bits (301), Expect = 3e-31
 Identities = 150/576 (26%), Positives = 250/576 (43%), Gaps = 70/576 (12%)

Query: 57  ERYKKWNMADLPIIPEQ-WQLRPRKSSSQQLTV--VRKLLKEATQIIHAGDPDREGQLL- 112
           ++ KK  +A + + PE+ W+ + +    ++  V  ++ L + A  I  A D DREG+ + 
Sbjct: 85  DKAKKALVARMGVDPERGWKAKYQTLPGKEKVVKELQSLAENADHIFLATDLDREGEAIA 144

Query: 113 --VDEVIDYCKVPKSKKETVQRLLISDLNLSAVKRALQG---LRSNREFIPLSVSALARS 167
             + EVI          E  QR++ +++  SA++ A      L +N     +  +  AR 
Sbjct: 145 WHLQEVIG------GDPERYQRVVFNEITKSAIQEAFSHPSQLNTN-----MVNAQQARR 193

Query: 168 RADWLYGMNMSRAYTLLGKKAGYQGVLSVGRVQTPVLGLVVRRDEEIEHFIPHDYFTLDA 227
             D + G  +S    LL KK      LS GRVQ+    LVV R+ EI+ F+P +++ + A
Sbjct: 194 FLDRVVGFMVS---PLLWKKVARG--LSAGRVQSVATRLVVEREGEIKAFVPEEFWDIHA 248

Query: 228 LIPYQNGTEYFDIRARWKPSEACLPWQDEEGRVTNRKLVDNVASRIANQPATVTESEQDQ 287
            +    G E   ++      +   P  + +  V    L D+           V+  E   
Sbjct: 249 ELTTL-GNEGLKMQVAKFKGDNFNPVNEAQAMVAVNALKDSKYQ--------VSSREVKA 299

Query: 288 TKQAAPLPYSLSALQIDAAKRYNFSAQQVLDLCQSLYEKHKLITYPRSDCRYLPKEHLAQ 347
           T      P+  S LQ  A+ R  F  ++ + + Q LYE    ITY R+D   L +E L  
Sbjct: 300 TSSKPSAPFITSTLQQAASTRLGFGVKKTMMMAQRLYEAGH-ITYMRTDSTNLSQEALDS 358

Query: 348 APDVVAAIANNAQEMVTAVNDADLSLRSKAWNDSKVDAHHAIIPTPKKASVNALSGHE-- 405
             D++     +       + DA +   SK   +   +AH AI P+    S  +LS  E  
Sbjct: 359 VRDMIGKEYGDKY-----LPDAPIRYGSK---EGAQEAHEAIRPSDVNVSATSLSDMERD 410

Query: 406 -MKVYQLIARQYLMQFYPAAIYAEAKLVFNIAGGIFIAKGRQLLSAGW-KVLTGQQDEQE 463
             ++Y+LI RQ++      A Y   +L          A GR L   GW +V T  + + E
Sbjct: 411 AQRLYELIWRQFVACQMTPAKYDATRLTVTAGDYELKASGRTLKFDGWTRVQTALKKKNE 470

Query: 464 ECVDKVPPLPVGIVLQCREGEIKQRQTEPPRHFTEATLLQAMTGIARFVADKELKKILRE 523
           E  + +P +  G VL   E   KQ  T+PP  ++EA+L+            KEL+K    
Sbjct: 471 ED-NTLPMVAEGDVLALEELLPKQHFTKPPARYSEASLV------------KELEK---- 513

Query: 524 TDGLGTEATRAGILDTLFKRGLLQRDNKLIKSTPAG----RGLIHALPSEATYPDMTAHW 579
             G+G  +T A I+ T+  RG ++ +N+   +   G      LI +     +Y D TA  
Sbjct: 514 -RGIGRPSTYATIISTIQDRGYVKVENRRFYAEKMGEIVSESLIGSFEELMSY-DFTAGM 571

Query: 580 EHQLQAIAEKGQAYQPFMQTLQGRLEQLIEQVQVAP 615
           E  L  +A+    ++  +      L   +E+ ++ P
Sbjct: 572 EQTLDNVAQGQLEWKKVLDNFYKGLTAQLEKAELPP 607