Pairwise Alignments

Query, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

Subject, 818 a.a., topoisomerase IA from Dechlorosoma suillum PS

 Score =  250 bits (638), Expect = 2e-70
 Identities = 198/651 (30%), Positives = 320/651 (49%), Gaps = 52/651 (7%)

Query: 4   LFIAEKPSLARAIADALPKPHKKEQGCIRCANGDIVTWCIGHLLEQVEPDAYDERYKKWN 63
           L I EKPS+A+ IA AL    K+E    R  +  IV   +GHL+E   P+A D  +   +
Sbjct: 5   LIIPEKPSVAQDIAAALGGFSKREDWFER--DDAIVCSALGHLVELACPEAEDPGF---D 59

Query: 64  MADLPIIPEQWQLRPRKSSSQQLTVVRKLL--KEATQIIHAGDPDREGQLLVDEVIDYCK 121
           +A LP IP ++ L P   +S +L++++KL+  ++   +++A D  REG+L+   +   C 
Sbjct: 60  LARLPAIPSRFNLAPIAKTSARLSLLKKLMNRQDVQLVVNACDAGREGELIFRYIYLCCG 119

Query: 122 VPKSKKETVQRLLISDLNLSAVKRALQGLRSNREFIPLSVSALARSRADWLYGMNMSRAY 181
             K     +QR+ I  +  +A+K A    R   E   L  SA +RS  DWL G+N +RAY
Sbjct: 120 CRKP----MQRMWIQSMTPAAIKEAFAKRRPGAELDGLFNSAQSRSEGDWLVGINGTRAY 175

Query: 182 TLLGKKAGYQGVLS-VGRVQTPVLGLVVRRDEEIEHFIPHDYFTLDALIPYQNGT---EY 237
           ++L  +   +  LS VGRVQTP L L+V R+E I  FI   Y+ +      + G    ++
Sbjct: 176 SILETRVTGERTLSTVGRVQTPTLALIVAREEAIRSFIAKPYYEIQGEFAAKTGVYGAKW 235

Query: 238 FDIRARWKPSEACLPWQDEEGRVTNRKLVDNVASRIANQPATVTESEQDQTKQAAPLPYS 297
            D   +  PS    P    E      K    VA     +P++V ++  D      P  + 
Sbjct: 236 IDTAFQADPST---PDARAERLFDKAKADAIVAKCTGKRPSSVADATTDSIS-TPPKLFD 291

Query: 298 LSALQIDAAKRYNFSAQQVLDLCQSLYEKHKLITYPRSDCRYLPKEHLAQAPDVVAAIAN 357
           L+ LQ +A K++ FSA Q L + Q+LYEK K++TYPR+D   LP+++L  A   +  + +
Sbjct: 292 LTTLQREANKKFGFSASQTLAIAQALYEKQKVLTYPRTDSSALPEDYLDTARATLTRLGD 351

Query: 358 NAQEMVTAVNDADLSLR--SKAWNDSKVDAHHAIIPTPKKASVNALSGHEMKVYQLIARQ 415
               +      A   ++   + +N++K+  H AIIPT   ++   LSG E K++ L++R+
Sbjct: 352 GGLTVSPFAAKAVAMVKPDKRIFNNAKISDHFAIIPTGLVSA--TLSGEEAKIFDLVSRR 409

Query: 416 YLMQFYPAAIYAEAKLVFNIAGGIFIAKGRQLLSAGWKVLTGQQDEQEE----CVDKVPP 471
           ++  F+P A Y +   +  +    F A GR L+  GW  + G++ +  E    C      
Sbjct: 410 FIAAFFPPAKYLQTVRLTVVEQETFRASGRVLVEEGWLAVYGKEADDSEDPALCAVAKDE 469

Query: 472 LPVGIVLQCREGEIKQRQTEPPRHFTEATLLQAMTGIARFVADKELKKILRETDGLGTEA 531
           LP     + R  E    +T+PP  FTEATLL AM      + D EL++ +++  GLGT A
Sbjct: 470 LP-----ENRRIEAVSLKTKPPLRFTEATLLGAMESAGADIEDDELREAMKDR-GLGTPA 523

Query: 532 TRAGILDTLFK---------RGLLQRDNKLIKSTPAGRGLIHALPSEA----TYPDMTAH 578
           TRA  ++ L           +  + R+ K +  T     L+  L           + T  
Sbjct: 524 TRASTIEALLADKDGKGRSIQPYVVREKKNLAPTNKAFKLVKFLRENGLTALASAETTGL 583

Query: 579 WEHQLQAIAEKGQAYQ-PFMQTLQGRLEQLIEQVQV----APVPVSLQALP 624
           WE +L+ + EKG+  +  FM  +     + + +VQ      P   ++QA P
Sbjct: 584 WEFKLREM-EKGRCQRSDFMGEIAALAREFVTRVQALAKDLPASAAMQAKP 633