Pairwise Alignments

Query, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

Subject, 861 a.a., DNA topoisomerase III from Dechlorosoma suillum PS

 Score =  299 bits (766), Expect = 3e-85
 Identities = 207/635 (32%), Positives = 335/635 (52%), Gaps = 42/635 (6%)

Query: 3   RLFIAEKPSLARAIADALPKPHKKEQGCIRCANGDIVTWCIGHLLEQVEPDAYDERYKKW 62
           +L IAEKPS+A  IA AL    K +      ++  +++  IGHLLE V P+ Y+ +  KW
Sbjct: 4   QLIIAEKPSVAADIAKALGGFTKHDDYFE--SDNFVLSSAIGHLLELVIPEEYEVKRGKW 61

Query: 63  NMADLPIIPEQWQLRPRKSSSQQLTVVRKLLK--EATQIIHAGDPDREGQLLVDEVIDYC 120
           + A LP+IP  ++L+P + +  +L ++ KL+K  +   +++A D  REG+L+ + +  + 
Sbjct: 62  SFAHLPVIPPHFELKPVEKTESRLKLLTKLIKRKDVDGLVNACDAGREGELIFNYIARHA 121

Query: 121 KVPKSKKETVQRLLISDLNLSAVKRALQGLRSNREFIPLSVSALARSRADWLYGMNMSRA 180
           K  K+    VQRL +  +   A++     LR   E   L  +A+ RS +DWL G+N +RA
Sbjct: 122 KSGKA----VQRLWLQSMTPQAIRDGFARLRRGEEMQGLGDAAVCRSESDWLVGINGTRA 177

Query: 181 YTLLGKKAGYQGVLSVGRVQTPVLGLVVRRDEEIEHFIPHDYFTLDALIPYQNGTEYFDI 240
            T    K G   + +VGRVQTP L LVV R+ +I  F    Y+ ++A      G    + 
Sbjct: 178 MTAFNSKTGGFHLTTVGRVQTPTLSLVVERERKIREFKARPYWEVEATFAAAAG----EY 233

Query: 241 RARWKPSEACLPWQDEEGRVTNRKLVDN-----VASRIANQPATVTESEQDQTKQAAPLP 295
           + +W   +     +DE+      +L D      + ++   QP  V+E  +  T Q +PL 
Sbjct: 234 KGKW--FDEAFKGKDEDEHARADRLWDEARAKALQAKCEGQPGEVSEEAKPST-QLSPLL 290

Query: 296 YSLSALQIDAAKRYNFSAQQVLDLCQSLYEKHKLITYPRSDCRYLPKEHL--AQAPDVVA 353
           + L++LQ +A  R+ FSA+  L L Q+LYEKHK++TYPR+D R LP+++L   QA   + 
Sbjct: 291 FDLTSLQREANSRFGFSAKNTLGLAQALYEKHKVLTYPRTDSRALPEDYLGTVQATLQMF 350

Query: 354 AIANNAQEMVTAVND-----ADLSLRSK-------AWNDSKVDAHHAIIPTPKKASVNAL 401
              N  +   T+V D     A+  L+SK        +N++K+  H AIIPT +  +   L
Sbjct: 351 NGENLTKGSDTSVVDRYGIFANKILKSKWVVPNKRIFNNAKISDHFAIIPTTQ--APKNL 408

Query: 402 SGHEMKVYQLIARQYLMQFYPAAIYAEAKLVFNIAGGIFIAKGRQLLSAGWKVLTGQQDE 461
           S  E K+Y L+ +++L  F+PAA Y     +  +AG  F  +G+ L++ GW  + G++  
Sbjct: 409 SEPEQKLYDLVVKRFLAVFFPAAEYLITTRITRVAGEPFKTEGKVLVNPGWLAIYGREG- 467

Query: 462 QEECVDKVPPLPVGIVLQCREGEIKQRQTEPPRHFTEATLLQAMTGIARFVADKELKKIL 521
           QE     +  +  G  +Q  E  + Q +T PP  ++EATLL AM G  + V D+EL+  +
Sbjct: 468 QEGDEGNLVAVSQGEKVQTEEVAVNQNETRPPARYSEATLLSAMEGAGKMVDDEELRAAM 527

Query: 522 RETDGLGTEATRAGILDTLFKRGLLQRDNKLIKSTPAGRGLIHALP----SEATYPDMTA 577
               GLGT ATRA I++ L     L R+ + +  T     L+  L     SE T P++T 
Sbjct: 528 AGR-GLGTPATRAQIIEGLITEQYLHREGRELIPTAKAFSLMTLLNGLGISELTSPELTG 586

Query: 578 HWEHQLQAIAEKGQAYQPFMQTLQGRLEQLIEQVQ 612
            WE +L  I     +   FMQ ++     ++++ +
Sbjct: 587 EWEWKLAQIERGDLSRSAFMQEIEEMTRHIVDRAK 621