Pairwise Alignments

Query, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

Subject, 758 a.a., DNA topoisomerase I (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  122 bits (305), Expect = 8e-32
 Identities = 134/549 (24%), Positives = 230/549 (41%), Gaps = 66/549 (12%)

Query: 86  LTVVRKLLKEATQIIHAGDPDREGQLLVDEVIDYCKVPKSKKETVQRLLISDLNLSAVKR 145
           ++ +++   +A  +  A DPDREG+ +   V +  +    K   +QR+  +++   AVK 
Sbjct: 64  VSALKEAAAKADNVYLAPDPDREGEAIAWHVAELIR---DKNTNIQRIQFNEITARAVKE 120

Query: 146 ALQGLRS-NREFIPLSVSALARSRADWLYGMNMSRAYTLLGKKAGYQGVLSVGRVQTPVL 204
           AL+  R  NR       +  AR   D L G  +S    LL KK   +  +S GRVQ+  L
Sbjct: 121 ALENPRELNRNLFD---AQQARRVLDRLVGYKLS---PLLWKKV--KRGISAGRVQSVAL 172

Query: 205 GLVVRRDEEIEHFIPHDYFTLDALIPYQNGTEYFDIRARWKPSEACL-PWQDEEGRVTNR 263
            L+V R+ E   F P +Y+   A +            A   P  A L     ++  + + 
Sbjct: 173 RLIVDRENERRAFNPEEYWLFRARLA----------GATPPPFRADLHKLHGKKPAIGSA 222

Query: 264 KLVDNVASRIANQPATVTESEQDQTKQAAPLPYSLSALQIDAAKRYNFSAQQVLDLCQSL 323
                V + +  QP  +T  ++ + ++    P+  S LQ  A++R  +SA++ +++ Q L
Sbjct: 223 ADAAAVEASMQGQPFVITGIDEKERQRQPQPPFITSTLQQSASQRLGYSAKRTMNIAQRL 282

Query: 324 YEKHK--------LITYPRSDCRYLPKEHLAQAPDVVAAIANNAQEMVTAVNDADLSLRS 375
           YE  +        LITY R+D   +  E    A + +AA            +      R 
Sbjct: 283 YEGVELGEAGTVALITYMRTDSVRIADEARDAAREFIAATWGG--------DHLPAKARQ 334

Query: 376 KAWNDSKVDAHHAIIPTPKKASVNA----LSGHEMKVYQLIARQYLMQFYPAAIYAEAKL 431
                   DAH AI P     + ++    L   + ++Y+L+ ++++     AA + +  +
Sbjct: 335 FKTKGGAQDAHEAIRPVDVSVTPDSVRHLLPPDQFQLYRLVWQRFVASQMAAARFHDTTV 394

Query: 432 VFNIAGGIFIAKGRQLLSAGWKVLTGQ---QDEQEECVDKVPPLPVGIVLQCREGEIKQR 488
                   + AKG +LL  G+   + Q   QD +E     +P L VG  L     E +Q+
Sbjct: 395 TIACGPVEWRAKGERLLFPGFLAASPQKEAQDGEEVAEGDLPKLSVGEELTALSVEKEQK 454

Query: 489 QTEPPRHFTEATLLQAMTGIARFVADKELKKILRETDGLGTEATRAGILDTLFKRGLLQR 548
            T+PP  +TEA+L++ +                 E  G+G  +T A I+ TL  R   + 
Sbjct: 455 FTQPPARYTEASLVREL-----------------EERGIGRPSTYAAIISTLLDRDYARL 497

Query: 549 DNKLIKSTPAGRGLIHALPSEATY---PDMTAHWEHQLQAIAEKGQAYQPFMQTLQGRLE 605
           + K    T  G  +   L    T     D TA  E  L  +AE    +   ++   G   
Sbjct: 498 EEKHFAPTDLGAVVCDLLAGHFTTLMDVDFTAQMEGSLDKVAEGELDWVKLLEDFTGGFN 557

Query: 606 QLIEQVQVA 614
            ++E+   A
Sbjct: 558 PVLERAAQA 566