Pairwise Alignments

Query, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

Subject, 702 a.a., DNA topoisomerase III (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  697 bits (1799), Expect = 0.0
 Identities = 371/660 (56%), Positives = 464/660 (70%), Gaps = 28/660 (4%)

Query: 4   LFIAEKPSLARAIADALPKPHKKEQGCIRCANGDIVTWCIGHLLEQVEPDAYDERYKKWN 63
           L+IAEKPSL RAIAD LPKPHKK +G I  ANG+ V+WC+GHLLEQ EPDAY+  +K W 
Sbjct: 3   LYIAEKPSLGRAIADVLPKPHKKGEGFIEDANGNCVSWCVGHLLEQAEPDAYNPDFKSWK 62

Query: 64  MADLPIIPEQWQLRPRKSSSQQLTVVRKLLKEATQIIHAGDPDREGQLLVDEVIDYCKVP 123
              LPI+PE+WQL+P+ ++  QLTV++KL+K+A  +++AGDPDREGQLLVDEVI Y  V 
Sbjct: 63  FEHLPIVPEKWQLKPKAATRSQLTVLKKLIKQADTLVNAGDPDREGQLLVDEVIAYLGVT 122

Query: 124 KSKKETVQRLLISDLNLSAVKRALQGLRSNREFIPLSVSALARSRADWLYGMNMSRAYTL 183
             K +  QRLLISDLN  AVKRAL  LRSNREFIPLS SALARSRADWLYGMNM+RAYT+
Sbjct: 123 GDKLQQTQRLLISDLNPQAVKRALSQLRSNREFIPLSTSALARSRADWLYGMNMTRAYTI 182

Query: 184 LGKKAGYQGVLSVGRVQTPVLGLVVRRDEEIEHFIPHDYFTLDALIPYQNGTEYFDIRAR 243
            GKK GYQGVLSVGRVQTP+LGL+VRRDEEI HF    ++ + A +   +  ++F   A+
Sbjct: 183 QGKKVGYQGVLSVGRVQTPLLGLIVRRDEEIAHFQSKPFYEVLAHL-VTDKQQFFS--AK 239

Query: 244 WKPSEACLPWQDEEGRVTNRKLVDNVASRIANQPATVTESEQDQTKQAAPLPYSLSALQI 303
           W+PSEAC P+ D+EGRV ++ L  NV  RI ++PA VT+      +Q+APLPYSLSALQI
Sbjct: 240 WQPSEACQPYMDDEGRVLSKGLAQNVVRRITDKPAKVTQLSTKDKQQSAPLPYSLSALQI 299

Query: 304 DAAKRYNFSAQQVLDLCQSLYEKHKLITYPRSDCRYLPKEHLAQAPDVVAAIANNAQEMV 363
           DAAKR+  SA++VLD CQSLYE+HKLITYPRSD RYLP E    A  V+ AI + A E+V
Sbjct: 300 DAAKRFGMSAKEVLDTCQSLYERHKLITYPRSDSRYLPTEQHGLASSVLNAITSGAPELV 359

Query: 364 TAVNDADLSLRSKAWNDSKVDAHHAIIPTPKKASVNALSGHEMKVYQLIARQYLMQFYPA 423
                 +  L+SKAW+D KVDAHHAIIPT K+ ++ +LS  E ++Y  IARQYL QFYPA
Sbjct: 360 AHSEAPNPRLKSKAWDDKKVDAHHAIIPTEKQPNLGSLSQRERQLYLHIARQYLAQFYPA 419

Query: 424 AIYAEAKLVFNIAGGIFIAKGRQLLSAGWKVL---------------TGQQDEQE----E 464
             Y+E  +   I GG+F  K RQ  S GWK L               T  QD+++    E
Sbjct: 420 YCYSETAVEVTIEGGLFKTKARQDKSLGWKQLFAREEGERKDTSNTETFAQDDKDKDEGE 479

Query: 465 CVDKVPPLPVGIVLQCREGEIKQRQTEPPRHFTEATLLQAMTGIARFVADKELKKILRET 524
              ++PPL +G VL C +GE+ ++QT+PP+ FT+ATLL AMTGI R+V D E++KIL+ET
Sbjct: 480 YAGQLPPLILGQVLHCNQGELVEKQTQPPKAFTDATLLGAMTGINRYVTDPEIRKILKET 539

Query: 525 DGLGTEATRAGILDTLFKRGLLQRDNKLIKSTPAGRGLIHALPSEATYPDMTAHWEHQLQ 584
           DGLGTEATRAGI++ LFKRG +QR  K I +T  G+GLI++LP  AT PDMTA WE  L 
Sbjct: 540 DGLGTEATRAGIIELLFKRGFIQRQGKSIVATEVGKGLINSLPLSATTPDMTALWEASLN 599

Query: 585 AIAEKGQAYQPFMQTLQGRLEQLIEQVQVAPVPVSLQALPAVSKPAFKR--TRRAPKSKA 642
            I  K  +YQ FMQ L G L  LI+    A +P +L  L       FKR  T+++   KA
Sbjct: 600 GICHKDISYQGFMQPLLGTLHSLIQNAG-AQLPSALNGLKG---QGFKRAATKKSGYRKA 655