Pairwise Alignments

Query, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

Subject, 878 a.a., DNA topoisomerase I (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  122 bits (306), Expect = 7e-32
 Identities = 171/650 (26%), Positives = 279/650 (42%), Gaps = 101/650 (15%)

Query: 4   LFIAEKPSLARAIADALPKPH--KKEQGCIRCANGDIVTWCIGHLLEQVEPDAYDE---- 57
           L I E P+ A+ I   L K    K   G IR    D+ T  I    E+V+  A  +    
Sbjct: 5   LVIVESPAKAKTINKYLGKEFIVKSSVGHIR----DLPTSSISDGTEKVKSAAEVKKMSP 60

Query: 58  ----RYKKWNMADLPIIPEQWQLRPRKSSSQQLTVV---RKLLKE-------ATQIIHAG 103
               RYKK  + D   +  +  + P K  + +  ++    K++KE       A QI  A 
Sbjct: 61  EEKARYKK--VKDHQALVSRMGVNPEKGWAAKYQILPGKEKVVKELQALADSADQIYLAT 118

Query: 104 DPDREGQLLVDEVIDYCKVPKSKKETVQRLLISDLNLSAVKRALQ---GLRSNREFIPLS 160
           D DREG+ +   + +      S+    QR++ +++  SA++ A      L +N     + 
Sbjct: 119 DLDREGEAIAWHLQEVIGGDPSR---YQRVVFNEITKSAIQEAFSKPASLDTN-----MV 170

Query: 161 VSALARSRADWLYGMNMSRAYTLLGKKAGYQGVLSVGRVQTPVLGLVVRRDEEIEHFIPH 220
            +  AR   D + G  +S    LL KK      LS GRVQ+  + LVV R+ EI+ F+P 
Sbjct: 171 NAQQARRFLDRVVGFMVS---PLLWKKVARG--LSAGRVQSVAVRLVVERESEIKAFVPE 225

Query: 221 DYFTLDALIPYQNGTEYFDIRARWK-PSEACLPWQ-----DEEGRVTNRKLVDNVASRIA 274
                          E++D+ A+   PS   L  +     D     TN +        ++
Sbjct: 226 ---------------EFWDVHAQLNTPSSEALRMEVVKYLDSAFEPTNEQQALAAVQALS 270

Query: 275 NQPATVTESEQDQTKQAAPLPYSLSALQIDAAKRYNFSAQQVLDLCQSLYEKHKLITYPR 334
           +    V   E   T+     P+  S LQ  A+ R  F  ++ + + Q LYE    ITY R
Sbjct: 271 SASFKVIAREDKATQSKPSAPFITSTLQQAASTRLGFGVKKTMMMAQRLYEAGH-ITYMR 329

Query: 335 SDCRYLPKEHLAQAPDVVAAIANNAQEMVTAVNDAD-LSLRSKAWNDSKVDAHHAIIPTP 393
           +D   L +E L    +++       +E       A+ +   SK   +   +AH AI P+ 
Sbjct: 330 TDSTNLSQEALDSVREMIG------KEYGAKYLPAEPIRYGSK---EGAQEAHEAIRPSN 380

Query: 394 KKASVNALSGHE---MKVYQLIARQYLMQFYPAAIYAEAKLVFNIAGGIFIAKGRQLLSA 450
            K    AL+  E    ++Y+LI RQ++      A+Y   KL    A     A GR L   
Sbjct: 381 VKVEAAALTDMERDAQRLYELIWRQFVSCQMTPALYDATKLTVKAADYELKATGRILRFD 440

Query: 451 GW-KVLTGQQDEQEECVDKVPPLPVGIVLQCREGEIKQRQTEPPRHFTEATLLQAMTGIA 509
           GW +V T  + + EE  + +P +  G VL   E E KQ  T+PP  ++EA+L+       
Sbjct: 441 GWTRVQTAIKKKNEED-NTLPAVNEGDVLSLVELEPKQHFTKPPARYSEASLV------- 492

Query: 510 RFVADKELKKILRETDGLGTEATRAGILDTLFKRGLLQRDNKLIKSTPAG----RGLIHA 565
                KEL+K      G+G  +T A I+ T+ +RG ++ +N+   +   G      L+++
Sbjct: 493 -----KELEK-----RGIGRPSTYATIISTIQERGYVKVENRRFYAEKMGEIVSERLVNS 542

Query: 566 LPSEATYPDMTAHWEHQLQAIAEKGQAYQPFMQTLQGRLEQLIEQVQVAP 615
                +Y D TA  E  L  +A+    ++  +        + +E+ ++AP
Sbjct: 543 FAELMSY-DFTASMEQTLDDVAKGELDWKKVLDGFYADFTKQLEKAELAP 591