Pairwise Alignments

Query, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

Subject, 865 a.a., DNA topoisomerase I from Klebsiella michiganensis M5al

 Score =  110 bits (275), Expect = 3e-28
 Identities = 138/550 (25%), Positives = 226/550 (41%), Gaps = 64/550 (11%)

Query: 89  VRKLLKEATQIIHAGDPDREGQLLVDEVIDYCKVPKSKKETVQRLLISDLNLSAVKRALQ 148
           +++L ++A  I  A D DREG+ +   + +   V    ++   R++ +++  +A+++A +
Sbjct: 96  LKQLAEKADHIYLATDLDREGEAIAWHLRE---VIGGDEQRYSRVVFNEITKNAIRQAFE 152

Query: 149 GLRSNREFIPLSVSALARSRADWLYGMNMSRAYTLLGKKAGYQGVLSVGRVQTPVLGLVV 208
             +     I    +  AR   D + G  +S    LL KK      LS GRVQ+  + LVV
Sbjct: 153 --KPGELNIDRVNAQQARRFMDRVVGYMVS---PLLWKKIARG--LSAGRVQSVAVRLVV 205

Query: 209 RRDEEIEHFIPHDYFTLDALIPYQNGTEYFDIRARWKPSEACLPWQ-----DEEGRVTNR 263
            R+ EI+ F+P +Y+ +DA              +   P    LP Q     D+  R  +R
Sbjct: 206 EREREIKAFVPEEYWEVDA--------------STTTPGGDALPLQVTHSGDKPFRPVSR 251

Query: 264 KLVDNVASRIANQPATVTESEQDQTKQAAPLPYSLSALQIDAAKRYNFSAQQVLDLCQSL 323
                  + +     +V E E   T      P+  S LQ  A+ R  F  ++ + + Q L
Sbjct: 252 DETMAAVALLEKASYSVLEREDKPTSSKPGAPFITSTLQQAASTRLGFGVKKTMMMAQRL 311

Query: 324 YEKHKLITYPRSDCRYLPKEHLAQAPDVVAAIANNAQEMVTAVNDADLSLRSKAWNDSKV 383
           YE    ITY R+D   L ++ L     V   I +N  +          S    A  ++  
Sbjct: 312 YEAGH-ITYMRTDSTNLSQDALNM---VRGYIGDNFGKKYLPE-----SANQYASKENSQ 362

Query: 384 DAHHAIIPTPKKASVNALSGHE---MKVYQLIARQYLMQFYPAAIYAEAKLVFNIAGGIF 440
           +AH AI P+        L   E    K+YQLI RQ++      A Y    L         
Sbjct: 363 EAHEAIRPSDVNVLAETLKDMESDAQKLYQLIWRQFVACQMTPAQYDSTTLTVKAGDFKL 422

Query: 441 IAKGRQLLSAGW-KVLTGQQDEQEECVDKVPPLPVGIVLQCREGEIKQRQTEPPRHFTEA 499
            A+GR L   GW KV+   +   E+    +P +  G  L   E    Q  T+PP  F+EA
Sbjct: 423 KARGRTLRFDGWTKVMPALRKGDED--RTLPLVNKGESLSLVELTPAQHFTKPPARFSEA 480

Query: 500 TLLQAMTGIARFVADKELKKILRETDGLGTEATRAGILDTLFKRGLLQRDNKLIKSTPAG 559
           +L+            KEL+K      G+G  +T A I+ T+  RG ++ +N+   +   G
Sbjct: 481 SLV------------KELEK-----RGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMG 523

Query: 560 RGLIHALPS---EATYPDMTAHWEHQLQAIAEKGQAYQPFMQTLQGRLEQLIEQVQVAPV 616
             +   L     +    D TA  E +L  +A     ++  +    G     ++  +  P 
Sbjct: 524 EIVTDRLEENFRDLMNYDFTAQMEDRLDQVANHQAEWKQVLDNFFGDFTSQLQTAEKDPE 583

Query: 617 PVSLQALPAV 626
              +Q  P V
Sbjct: 584 EGGMQPNPMV 593