Pairwise Alignments

Query, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

Subject, 651 a.a., DNA topoisomerase III from Klebsiella michiganensis M5al

 Score =  728 bits (1878), Expect = 0.0
 Identities = 375/643 (58%), Positives = 469/643 (72%), Gaps = 11/643 (1%)

Query: 3   RLFIAEKPSLARAIADALPKPHKKEQGCIRCANGDIVTWCIGHLLEQVEPDAYDERYKKW 62
           RLFIAEKPSL RAIA+ LPKPH+K  G I C NG +VTWCIGHLLEQ +PD YD RY +W
Sbjct: 2   RLFIAEKPSLGRAIAEVLPKPHRKGDGYIECGNGQVVTWCIGHLLEQAQPDVYDARYARW 61

Query: 63  NMADLPIIPEQWQLRPRKSSSQQLTVVRKLLKEATQIIHAGDPDREGQLLVDEVIDYCKV 122
           N+ DLPI+PE+WQL+P+ S ++QL V+++LL +A ++IHAGDPDREGQLLVDEV+DY ++
Sbjct: 62  NLLDLPIVPEKWQLQPKPSVTKQLNVIKRLLGDAQEVIHAGDPDREGQLLVDEVLDYLQL 121

Query: 123 PKSKKETVQRLLISDLNLSAVKRALQGLRSNREFIPLSVSALARSRADWLYGMNMSRAYT 182
              K++ VQR LI+DLN  AV+RA+  LR+N EF+PL VSALAR+RADWLYG+NM+RAYT
Sbjct: 122 APEKRQQVQRCLINDLNPQAVERAINRLRANSEFVPLCVSALARARADWLYGINMTRAYT 181

Query: 183 LLGKKAGYQGVLSVGRVQTPVLGLVVRRDEEIEHFIPHDYFTLDALIPYQNGTEYFDIRA 242
           +LG+ AGYQGVLSVGRVQTPVLGLVVRRDEEIE+F+  D+F + A I       +    A
Sbjct: 182 ILGRNAGYQGVLSVGRVQTPVLGLVVRRDEEIENFVAKDFFDVKAHIVTPKDERFV---A 238

Query: 243 RWKPSEACLPWQDEEGRVTNRKLVDNVASRIANQPATVTESEQDQTKQAAPLPYSLSALQ 302
            W PSEAC P+QDEEGR+ +R L ++V  RI  QPATVT     +  + APLP+SLSALQ
Sbjct: 239 TWVPSEACEPYQDEEGRLLHRSLAEHVVKRIEGQPATVTAYNDKRDSEPAPLPFSLSALQ 298

Query: 303 IDAAKRYNFSAQQVLDLCQSLYEKHKLITYPRSDCRYLPKEHLAQAPDVVAAIANNAQEM 362
           I+AAKR+ FSAQ VLD+CQ LYE HKLITYPRSD RYLP+EH A    V+ AI+ +A ++
Sbjct: 299 IEAAKRFGFSAQNVLDICQKLYETHKLITYPRSDSRYLPEEHFAGRHAVLNAISVHAADL 358

Query: 363 VTAVNDADLSLRSKAWNDSKVDAHHAIIPTPKKASVNALSGHEMKVYQLIARQYLMQFYP 422
           +      D  +R++ W+D KVDAHHAIIPT + + V  LS +E KVY LIARQYLMQF P
Sbjct: 359 LPQ-PVVDPEIRNRCWDDKKVDAHHAIIPTARSSQVK-LSDNEEKVYGLIARQYLMQFCP 416

Query: 423 AAIYAEAKLVFNIAGGIFIAKGRQLLSAGWKVLTGQQDEQEECVDKVPPLPV---GIVLQ 479
            A++ + ++  +IA G F+AK R L  AGW+ L G ++  EE  +   PLPV      L 
Sbjct: 417 DAVFRKCQIDLDIANGKFVAKARFLAEAGWRTLLGNKERDEE--NDGMPLPVVAKDDELL 474

Query: 480 CREGEIKQRQTEPPRHFTEATLLQAMTGIARFVADKELKKILRETDGLGTEATRAGILDT 539
           C +GE+ +RQT+PPRHFT+ATLL AMTGIARFV DK+LKKILR TDGLGTEATRAGI++ 
Sbjct: 475 CEKGEVVERQTQPPRHFTDATLLSAMTGIARFVQDKDLKKILRATDGLGTEATRAGIIEL 534

Query: 540 LFKRGLLQRDNKLIKSTPAGRGLIHALPSEATYPDMTAHWEHQLQAIAEKGQAYQPFMQT 599
           LFKRG L +  + I ST AG+ L H+LP  AT PDMTAHWE  L  I+EK   YQ FMQ 
Sbjct: 535 LFKRGFLTKKGRYIHSTDAGKALFHSLPEMATRPDMTAHWESILTQISEKQCRYQDFMQP 594

Query: 600 LQGRLEQLIEQVQVAPVPVSLQAL-PAVSKPAFKRTRRAPKSK 641
           L G L QLI+Q +  PV      + P   K +F + +   K+K
Sbjct: 595 LVGTLFQLIDQARSTPVRRFRGIVAPGDGKKSFSKGKGRAKAK 637