Pairwise Alignments

Query, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

Subject, 760 a.a., DNA topoisomerase I (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  116 bits (291), Expect = 3e-30
 Identities = 133/538 (24%), Positives = 228/538 (42%), Gaps = 65/538 (12%)

Query: 75  QLRPRKSSSQQLTVVRKLLKEATQIIHAGDPDREGQLLVDEVIDYCKVPKSKKETVQRLL 134
           Q R      + +  +R+   +A  +  A DPDREG+ +   V     + + K + ++R+ 
Sbjct: 53  QYRVIDGKQKVVDTLREAAAKADTVYLAPDPDREGEAIAWHV---AALIEGKADNIKRIQ 109

Query: 135 ISDLNLSAVKRALQGLRS-NREFIPLSVSALARSRADWLYGMNMSRAYTLLGKKAGYQGV 193
            +++   AV+ AL+  R  NR       +  AR   D L G  +S    LL KK   +  
Sbjct: 110 FNEITARAVREALENPRDLNRALFD---AQQARRVLDRLVGYKLS---PLLWKKV--KRG 161

Query: 194 LSVGRVQTPVLGLVVRRDEEIEHFIPHDYFTLDALIPYQ-NGTEYFDIRARWKPSEACLP 252
           +S GRVQ+  L L+V R+ E   F P +Y+   A+      G        ++ P +A L 
Sbjct: 162 ISAGRVQSVALRLIVDRESERRAFTPEEYWLFRAMFAKNVPGATPTSPDPQYAPFKAELA 221

Query: 253 WQD-EEGRVTNRKLVDNVASRIANQPATVTESEQDQTKQAAPLPYSLSALQIDAAKRYNF 311
             D ++  V +    + +   +  +P  +T  E+ + ++    P+  S LQ  A +R  +
Sbjct: 222 KIDGKKAHVADADAANALEDAMRGKPFVITAVERKKRERQPQPPFITSTLQQAANQRLGY 281

Query: 312 SAQQVLDLCQSLYEKHK--------LITYPRSDCRYLPKEHLAQAPDVVAAIANNAQEMV 363
           SA++ +++ Q LYE  +        LITY R+D   +  E             + A+  V
Sbjct: 282 SAKRTMNIAQRLYEGVELGEMGTVALITYMRTDSVRVSDE-----------ARDAARAFV 330

Query: 364 TAVNDADL---SLRSKAWNDSKVDAHHAIIP-----TPKKASVNALSGHEMKVYQLIARQ 415
           T    AD      R      S  DAH A+ P     TP     + L   + ++Y+L+  +
Sbjct: 331 TETWGADFCPAKPRQFKTKGSAQDAHEAVRPVDVNVTPDSVK-HLLPPDQFQLYRLVWSR 389

Query: 416 YLMQFYPAAIYAEAKLVFNIAGGIFIAKGRQLLSAGWKVLTGQQDEQEECVDKVPPLPVG 475
           ++      A + +  +        + AKG ++L  G+     Q++E +    ++PPL  G
Sbjct: 390 FVASQMAPARFDDTTVAIACGPAEWRAKGERMLFPGFLAAMPQKEEGDA---ELPPLQEG 446

Query: 476 IVLQCREGEIKQRQTEPPRHFTEATLLQAMTGIARFVADKELKKILRETDGLGTEATRAG 535
             L     E +Q+ T+PP  +TEA+L++ +                 E  G+G  +T A 
Sbjct: 447 ETLHPVSVEKEQKFTQPPARYTEASLVREL-----------------EERGIGRPSTYAS 489

Query: 536 ILDTLFKRGLLQRDNKLIKSTPAGRGLIHALPSEATY---PDMTAHWEHQLQAIAEKG 590
           I+ TL  R   + ++K    T  G  +   L    T       TA  E  L  +AE G
Sbjct: 490 IISTLIDRDYTRLEDKHFVPTDLGATVCDLLARHFTTLMDVGFTAQMEDSLDKVAEGG 547