Pairwise Alignments

Query, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

Subject, 862 a.a., DNA topoisomerase III (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  176 bits (446), Expect = 4e-48
 Identities = 113/355 (31%), Positives = 181/355 (50%), Gaps = 9/355 (2%)

Query: 252 PWQDEEGRVTNRKLVDNVASRIANQPATVTESEQDQTKQAAPLPYSLSALQIDAAKRYNF 311
           P    E RV + +  D +A+    +   V   +     Q  PLP+ L+ LQ +A  R+ +
Sbjct: 333 PPDRRETRVDSGEEADAIATACTGKLGIVESVQGRAGTQQPPLPFDLTTLQREANTRFGY 392

Query: 312 SAQQVLDLCQSLYEKHKLITYPRSDCRYLPKEHLAQAPDVVAAIANNAQE--MVTAVNDA 369
           SA+  L   QSLYE  KLITYPR+D R+L KE   +  + + A+ +   E  M+      
Sbjct: 393 SAKDTLTHAQSLYETRKLITYPRTDSRHLTKELFGEILNHLRAVHHLYPEETMLAVGRIK 452

Query: 370 DLSLRSKAWNDSKVDAHHAIIPTPKKASVNALSGHEMKVYQLIARQYLMQFYPAAIYAEA 429
               R    +D KV  HHAIIPT +K ++  LS  E  +Y ++ R+ +  F P A ++ +
Sbjct: 453 SGKARFACVDDRKVTDHHAIIPTARKGNLTQLSAPERNIYDMVCRRTIAAFCPEAKFSTS 512

Query: 430 KLVFNIAGGIFIAKGRQLLSAGWKVLTGQQDEQEECVDKVPPLPVGIVLQCREGEIKQRQ 489
            +   +    FIAKG+     GW V+   +  ++     +P L  G  L   +    +RQ
Sbjct: 513 TVTVMVGEHPFIAKGKVFKDKGWMVVEPWRTAED---TPLPQLRKGSKLLTLDVGPVKRQ 569

Query: 490 TEPPRHFTEATLLQAMTGIARFVADKELKKILRETDGLGTEATRAGILDTLFKRGLLQRD 549
           T+ P HFT+A+LL AM    R V D  L++ ++E  GLGT ATRA +++TL  RG + + 
Sbjct: 570 TKAPAHFTDASLLAAMETAGRLVEDDALRQAMKER-GLGTPATRAQVIETLVARGYVAKQ 628

Query: 550 NKLIKSTPAGRGL---IHALPSEATYPDMTAHWEHQLQAIAEKGQAYQPFMQTLQ 601
            K + +T  G  +   +  L  +   P++T  WE +L+ I     +Y  FM++++
Sbjct: 629 GKKLVATDRGMQVAETVTTLLPDVASPELTGQWEKRLKDIEAGADSYPAFMRSIR 683



 Score =  139 bits (350), Expect = 5e-37
 Identities = 88/229 (38%), Positives = 138/229 (60%), Gaps = 18/229 (7%)

Query: 4   LFIAEKPSLARAIADALPKPHKKEQGCIRCANGDIVTWCIGHLLEQVEPDAYDERYK-KW 62
           L IAEKPS+AR IA  L     +  G +   +  +V+W +GHL+   EP+  DE +  +W
Sbjct: 5   LIIAEKPSVAREIAP-LVGAQGRRAGYLEGPD-HLVSWAVGHLVGIAEPEEQDEAWAGRW 62

Query: 63  NMADLPIIPEQWQLRPRKSSSQQLTVVRKLLKE--ATQIIHAGDPDREGQLLVDEV--ID 118
            +  LP++P ++QLR    ++ Q +V+++LL +   T I++A D  REG+L+   +  + 
Sbjct: 63  TLEQLPMLPPRFQLRVLPETADQFSVLQRLLLDDRVTGIVNATDAGREGELIFRRIYLVA 122

Query: 119 YCKVPKSKKETVQRLLISDLNLSAVKRALQGLRSNREFIPLSVSALARSRADWLYGMNMS 178
            C  P      V+RL  SD+    ++++L  L  + E   L ++A AR+ ADWL GMN S
Sbjct: 123 GCDKP------VRRLWASDMTEEGLRKSLARLLPDEEKRNLGLAAFARAEADWLVGMNFS 176

Query: 179 RAYTLLGKKAGYQGVLSVGRVQTPVLGLVVRRDEEIEHFIPHDYFTLDA 227
           R +T+   K+G  G++SVGRVQTPVL L+  R  +IEHF P D++T++A
Sbjct: 177 RLFTV---KSG--GLVSVGRVQTPVLCLLADRRRDIEHFTPQDFWTVEA 220