Pairwise Alignments

Query, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

Subject, 713 a.a., DNA topoisomerase 3 from Phocaeicola vulgatus CL09T03C04

 Score =  302 bits (774), Expect = 3e-86
 Identities = 220/674 (32%), Positives = 350/674 (51%), Gaps = 55/674 (8%)

Query: 6   IAEKPSLARAIADALPKPHKKEQGCIRCANGDIVTWCIGHLLEQVEPDAYDERYKKWNMA 65
           IAEKPS+AR IAD L    KK+ G I   NG  VTW  GHL    EP  Y   +K W+++
Sbjct: 5   IAEKPSVARDIADVLGAKTKKD-GYIE-GNGYQVTWTFGHLCTLKEPHEYTPSWKAWSLS 62

Query: 66  DLPIIPEQWQLR--PRKSSSQQLTVVRKLLKEATQIIHAGDPDREGQLLVDEVIDYCKVP 123
            LP+IP ++ ++        +Q  ++  L++ A +II+ GD  +EG+L+   V+      
Sbjct: 63  SLPMIPPRFGIKLISDPGIEKQFRIIEGLMQNADEIINCGDAGQEGELIQRWVMQKA--- 119

Query: 124 KSKKETVQRLLISDLNLSAVKRALQGLRSNREFIPLSVSALARSRADWLYGMNMSRAYTL 183
                 V+RL IS L   A++     L+  +EF PL  + L+R+  DW+ GMN +R YTL
Sbjct: 120 -GAHCPVKRLWISSLTEEAIREGFSKLKDQKEFQPLYEAGLSRAIGDWVLGMNATRLYTL 178

Query: 184 LGKKAGYQGVLSVGRVQTPVLGLVVRRDEEIEHFIPHDYFTLDALIPYQNGTEYFDIR-- 241
             K    + +LS+GRVQTP L L+V+R +EIE+F P  Y+ L  L  Y+  T    IR  
Sbjct: 179 --KYGQNRQILSIGRVQTPTLALIVKRQQEIENFTPQQYWVLATL--YRETTFSAIIRKS 234

Query: 242 ----------ARWKPSEACLPWQDEEGR-----VTNRKLVDNVASRIANQPATVTESEQD 286
                     A+  P +A    +  EG      +T+      +  RI N P TVTE  + 
Sbjct: 235 DEELAQEESDAKENPKKA----KKAEGNRGIPPITDLATGQALMERIKNVPFTVTEVAKK 290

Query: 287 QTKQAAPLPYSLSALQIDAAKRYNFSAQQVLDLCQSLYEKHKLITYPRSDCRYLPKEHLA 346
           Q  +A P  + L++LQ++  K++ +SA + L L QSLYEK K+ TYPR D  +L  +   
Sbjct: 291 QGTEAPPRLFDLTSLQVECNKKFAYSADETLKLIQSLYEK-KVTTYPRVDTTFLSDDIYP 349

Query: 347 QAPDVVAAIANNAQEMVTAVNDADLSLRS-KAWNDSKVDAHHAIIPTPKKASVNALSGHE 405
           +  +++A +      + TA       ++S K +++SKV  HHAIIPT  +  VN L+  E
Sbjct: 350 KCSNILAGL--TPYTVFTAPLAGQKLIKSKKVFDNSKVTDHHAIIPT-GQPPVN-LTEME 405

Query: 406 MKVYQLIARQYLMQFYPAAIYAEAKLVFNIAGGIFIAKGRQLLSAGWKVL---------T 456
            +V+ L+AR+++  FYP   +A   ++       F A G+Q+L  GW+V+          
Sbjct: 406 KRVFDLVARRFIAVFYPDCKFATTTVIGEADSIEFKATGKQILDPGWRVIFAKPQTNLPE 465

Query: 457 GQQDEQEECVDKVPPLPVGIVLQCREG----EIKQRQTEPPRHFTEATLLQAMTGIARFV 512
           G  D   E  +      +   ++   G    ++ ++ T+PPR +TEATLL+AM    + V
Sbjct: 466 GMTDPDAEARENDEEHSLPAFVKGESGPHLPKLDEKWTQPPRPYTEATLLRAMETAGKLV 525

Query: 513 ADKELKKILRETDGLGTEATRAGILDTLFKRGLLQRDNKLIKSTPAGRGLIHALPSE-AT 571
            + EL+  L+E +G+G  +TRA I++TLFKR  ++++ K + +TP G  L+  +  E   
Sbjct: 526 DNDELRDALKE-NGIGRPSTRAAIIETLFKRHYIRKERKNLIATPTGIELVGLIREELLK 584

Query: 572 YPDMTAHWEHQLQAIAEKGQAYQPFMQTLQGRLEQLIEQVQVAPVPVSLQAL-PAVSKPA 630
             ++T  WE +L+ I +K      F+  L+  + +++  V        +  +    +K A
Sbjct: 585 SAELTGIWEKKLREIEKKSYDATTFLNELKQMVSEIVHSVLSDNTNRRVTTIEETATKTA 644

Query: 631 FKRTRRAPKSKART 644
              T + PK KA T
Sbjct: 645 TTATVKQPKKKAGT 658