Pairwise Alignments

Query, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

Subject, 695 a.a., type IA DNA topoisomerase from Phocaeicola vulgatus CL09T03C04

 Score =  249 bits (635), Expect = 4e-70
 Identities = 194/604 (32%), Positives = 299/604 (49%), Gaps = 55/604 (9%)

Query: 3   RLFIAEKPSLARAIADALPKPHKKEQGCIRCANGDIVTWCIGHLLEQVEPDAYDERYKKW 62
           +  IAEKPS+AR IA  +    K+E+G      G  VTW  GHL++   PD Y  R   +
Sbjct: 2   KTIIAEKPSVAREIARIVGAT-KREEGYFE-GGGYAVTWAFGHLVQLAMPDGYGVR--GF 57

Query: 63  NMADLPIIPEQWQLRPRKSSSQ-----------QLTVVRKLLKEATQIIHAGDPDREGQL 111
              +LPIIP+ + L PR+  ++           Q+ V+++L   +  II A D  REG+L
Sbjct: 58  VRDNLPIIPDTFTLVPRQVRTEKGYKPDSGVVSQIKVIKRLFDTSEHIIVATDAGREGEL 117

Query: 112 LVDEVIDY--CKVPKSKKETVQRLLISDLNLSAVKRALQGLRSNREFIPLSVSALARSRA 169
           +   +  Y  C  P        RL IS L   A++  L+ L    ++  L ++A ARS +
Sbjct: 118 IFRYLYHYTGCTTP------FVRLWISSLTDKAIREGLRKLEDGSKYDNLYLAAKARSES 171

Query: 170 DWLYGMNMSRAYTLLGKKAGYQGVLSVGRVQTPVLGLVVRRDEEIEHFIPHDYFTLDALI 229
           DWL G+N ++A ++    A   G  SVGRVQTP L +V  R  E   F    ++ L    
Sbjct: 172 DWLVGINGTQALSI----AAGHGTYSVGRVQTPTLAMVCERYWENRRFTSEAFWQLHIAT 227

Query: 230 PYQNGTEY-FDIRARWKPSEACLPWQDEEGRVTNRKLVDNVASRIANQPATVTESEQDQT 288
              +G    F    +WK  E  +            +L + V    A   ATVT++E+ + 
Sbjct: 228 DGCDGEVVKFSSSEKWKEKEPAM------------ELYNKVK---AAGCATVTKAERKEK 272

Query: 289 KQAAPLPYSLSALQIDAAKRYNFSAQQVLDLCQSLYEKHKLITYPRSDCRYLPKEHLAQA 348
            +  PL Y L+ LQ +A  ++ F+A+Q L++ Q LYEK KLITYPR+  RY+P++  A+ 
Sbjct: 273 TEETPLLYDLTTLQKEANAKHGFTAEQTLEIAQKLYEK-KLITYPRTGSRYIPEDVFAEI 331

Query: 349 PDVVAAIANNAQEMVTAVNDADLSLRSKAWNDSKVDAHHAIIPTPKKASVNALSGHEMKV 408
           P ++A I    +        A  + RS   +D KV  HHA++ T +K     LS  +  +
Sbjct: 332 PKLLAFIGTQPEWKDKVRAKAAPTRRSV--DDGKVTDHHALLVTGEKPLF--LSKEDNTI 387

Query: 409 YQLIARQYLMQFYPAAIYAEAKLVFNIAGGIFIAKGRQLLSAGWKVLTGQQDEQEECVDK 468
           YQ+IA + +  F    +     +    AG  F  KG  +   GW+ + G++ E+      
Sbjct: 388 YQMIAGRMVEAFSEKCVKDVTTVTAECAGVEFTVKGSVVKQTGWRAVYGEEKEE----IT 443

Query: 469 VPPLPVGIVLQCREGEIKQRQTEPPRHFTEATLLQAMTGIARFVADKELKKILRETDGLG 528
           +P    G  L  +   I + +T+P    TEATLL AM    + + D  L++ +++  G+G
Sbjct: 444 IPGWQEGDTLTPKGSSITEGKTKPKPLHTEATLLSAMETAGKEIEDDALRQAMKDC-GIG 502

Query: 529 TEATRAGILDTLFKRGLLQRDNKLIKSTPAGRGLIHALPS-EATYPDMTAHWEHQLQAIA 587
           T ATRA I++TLFKRG ++R  K +  T  G  L   + +       MT  WE +L  I 
Sbjct: 503 TPATRASIIETLFKRGYMERCKKSLVPTEKGLALNSVVKTMRIADVAMTGEWEKELARI- 561

Query: 588 EKGQ 591
           E+G+
Sbjct: 562 ERGE 565