Pairwise Alignments

Query, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

Subject, 889 a.a., DNA topoisomerase-3 from Paraburkholderia bryophila 376MFSha3.1

 Score =  298 bits (762), Expect = 9e-85
 Identities = 200/621 (32%), Positives = 327/621 (52%), Gaps = 28/621 (4%)

Query: 4   LFIAEKPSLARAIADALPKPHKKEQGCIRCANGDIVTWCIGHLLEQVEPDAYDERYKKWN 63
           L IAEKPS+A  IA AL    K ++     ++  +++  +GHLLE   PD Y+ +  KW+
Sbjct: 5   LIIAEKPSVANDIARALGGFTKHDE--YYESDEYVLSSAVGHLLEIAAPDEYEVKRGKWS 62

Query: 64  MADLPIIPEQWQLRPRKSSSQQLTVVRKLLK--EATQIIHAGDPDREGQLLVDEVIDYCK 121
            A+LP+IP  + L P   S  +L V+ KLLK  +  ++I+A D  REG+L+   +  + K
Sbjct: 63  FANLPVIPPHFDLNPIAKSESRLKVLTKLLKRKDIDRLINACDAGREGELIFRLIAQHAK 122

Query: 122 VPKSKKETVQRLLISDLNLSAVKRALQGLRSNREFIPLSVSALARSRADWLYGMNMSRAY 181
                K+ VQRL +  +  +A++     LRS+ E  PL+ +A  RS ADWL G+N +RA 
Sbjct: 123 A----KQPVQRLWLQSMTPAAIRDGFARLRSDEEMQPLADAARCRSEADWLVGINGTRAM 178

Query: 182 TLLGKKAGYQGVLSVGRVQTPVLGLVVRRDEEIEHFIPHDYFTLDALIPYQNG---TEYF 238
           T    K G   + +VGRVQTP L +VV R+E+I  F+P DY+ + A      G     +F
Sbjct: 179 TAFNSKGGGFFLTTVGRVQTPTLSIVVEREEKIRRFVPRDYWEVKAEFVCAAGFYEGRWF 238

Query: 239 DIRARWKPSEACLPWQDEEGRVTNRKLVDNVASRIANQPATVTESEQDQTKQAAPLPYSL 298
           D   ++K  E     +  + R+      + + +    Q  TV+E  +  T Q +P  + L
Sbjct: 239 D--PKFKRDE--FDPEKRDSRLWALPAAETIVAACRGQIGTVSEESKPST-QLSPALFDL 293

Query: 299 SALQIDAAKRYNFSAQQVLDLCQSLYEKHKLITYPRSDCRYLPKEHLAQAPDVVAAI--A 356
           ++LQ +A  R+ FSA+  L L Q+LYEKHK++TYPR+D R LP++++      +  +  +
Sbjct: 294 TSLQREANGRFGFSAKNTLGLAQALYEKHKVLTYPRTDARALPEDYMDTVKQTLGMLKES 353

Query: 357 NNAQEMVTAVNDAD-LSLRSKAWNDSKVDAHHAIIPTPKKASVNALSGHEMKVYQLIARQ 415
           NN       V D   +    + +++SK+  H AIIPT +  +   LS  E K+Y L+ ++
Sbjct: 354 NNYLPFAKQVLDKGWVKPNKRIFDNSKISDHFAIIPTLQ--APKNLSEPEQKLYDLVVKR 411

Query: 416 YLMQFYPAAIYAEAKLVFNIAGGIFIAKGRQLLSAGWKVLTGQQDEQEECVDKVPPLPVG 475
           +L  F+PAA +     +  + G  F  +G+ L+  GW  + G++   E+    + P+   
Sbjct: 412 FLSVFFPAAEFKVTTRITEVVGHHFKTEGKVLVEPGWLQVYGREISGEDA--NLVPVQKD 469

Query: 476 IVLQCREGEIKQRQTEPPRHFTEATLLQAMTGIARFVADKELKKILRETDGLGTEATRAG 535
             ++  +   +Q  T+PP  + EATLL AM G  + V D EL++ +    GLGT ATRA 
Sbjct: 470 EKVKTDKIAAQQLVTKPPARYNEATLLSAMEGAGKLVEDDELREAM-AAKGLGTPATRAA 528

Query: 536 ILDTLFKRGLLQRDNKLIKSTPAGRGLIHAL----PSEATYPDMTAHWEHQLQAIAEKGQ 591
           I++ L     L R+ + +  T     L+  L      E T P++T  WE++L  +     
Sbjct: 529 IIEGLLGEKYLIREGRDLIPTAKAFQLMTLLRGLGVKELTAPELTGEWEYKLSQMERGNL 588

Query: 592 AYQPFMQTLQGRLEQLIEQVQ 612
               FMQ +    + ++++ +
Sbjct: 589 PRDAFMQEIARMTQTIVKRAK 609