Pairwise Alignments

Query, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

Subject, 586 a.a., DNA topoisomerase I (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  156 bits (395), Expect = 2e-42
 Identities = 164/630 (26%), Positives = 266/630 (42%), Gaps = 78/630 (12%)

Query: 6   IAEKPSLARAIADALPKPHKKEQGCIRCANGDIVTWCIGHLLEQVEPDAYDERYKKWNMA 65
           + +KP++ + IA  L   H +E G +   NG +VTW  G++L    P  Y     +    
Sbjct: 5   LTDKPNVGKEIARILGA-HTREDGYMS-GNGYMVTWTFGNMLSLAMPKDYG--MDRPERG 60

Query: 66  DLPIIPEQWQLR-----------PRKSSSQQLTVVRKLLKEATQIIHAGDPDREGQLLVD 114
           D PI P  ++L            P  ++  QL V+ K+      II A D  REG+++  
Sbjct: 61  DFPINPAPFRLMVKHIKTDTGWIPDINAVLQLKVIEKVFDACESIIAATDASREGEMVFR 120

Query: 115 EVIDYCKVPKSKKETVQRLLISDLNLSAVKRALQGLRSNREFIPLSVSALARSRADWLYG 174
            +  Y +  KS +    RL IS L   AV   +  LR    +  + ++A +R++ADW+ G
Sbjct: 121 YLYRYLECRKSYR----RLWISSLTDEAVLEGMDNLRPGSLYDHMFLAADSRNKADWVLG 176

Query: 175 MNMSRAYTLLGKKAGYQGVLSVGRVQTPVLGLVVRRDEEIEHFIPHDYFTL-------DA 227
           +N S A      +A   G  S+GRVQTP+L  +  R  E E+ I  D F +       + 
Sbjct: 177 LNASYALC----QATGTGNNSLGRVQTPILAAISSRYRERENHIATDTFPVFISLCKNNT 232

Query: 228 LIPYQNGTEYFDIRARWKPSEACLPWQDEEGRVTNRKLVDNVASRIANQPATVTESEQDQ 287
           L+  +   E+ D  A  +    C             KL  +         A VT   +  
Sbjct: 233 LLKMRCTEEFTDREAAARLYSDC-------------KLAGH---------ARVTAVSRQV 270

Query: 288 TKQAAPLPYSLSALQIDAAKRYNFSAQQVLDLCQSLYEKHKLITYPRSDCRYLPKEHLAQ 347
            +   P  Y+L+ LQ DA   Y  +A + L++ Q LYEK KLI+YPR+  R+LP++   +
Sbjct: 271 REIEPPALYNLTELQKDANNYYGMTAGKSLEIAQKLYEK-KLISYPRTAGRFLPRDVYDK 329

Query: 348 APDVVAAIANNAQ--EMVTAVNDADLSLRSKAWNDSKVDAHHAIIPTPKKASVNALSGHE 405
            P ++  I N  +    V ++      L  K  ++ +   HHAII T        L+  E
Sbjct: 330 LPRIMEKILNRKEFRPYVRSMGINIFDLPDKVVDEGQAAEHHAIIITDTYPE--GLNREE 387

Query: 406 MKVYQLIARQYLMQFYPAAIYAEAKLVFNIAGGIFIAKGRQLLSAGWKVLTGQQDE---Q 462
           M++Y +I  + L  F P        +    A   F     +++  GW  +  ++     +
Sbjct: 388 MQLYMMIIGRMLEAFMPVCRAEYTTVDAVCAARNFRCHACRIIEKGWFGIFERESVIAGR 447

Query: 463 EECVDKVPPLPVGIVLQCREGEIKQRQTEPPRHFTEATLLQAMTGIARFVADKELKKILR 522
           E     +P L  G         +  R+      +T+A L+  M                 
Sbjct: 448 EYGFSPIPQLENGETAAVTGCSLIHRKDLTVSAYTDAELITYM----------------- 490

Query: 523 ETDGLGTEATRAGILDTLFKRGLLQRDNKLIKSTPAGRGLIHALPS-EATYPDMTAHWEH 581
           +T GLGT ATR GIL TL  R  ++   K I  T  G  +   + + +     +T+ WE 
Sbjct: 491 DTAGLGTAATRTGILQTLIDRKYVRYSGKYIIPTRKGLYIYETVRNMKIAETALTSGWEA 550

Query: 582 QLQAIAEKGQAYQPFMQTLQGRLEQLIEQV 611
           QL  +       + FM+ +     ++ E +
Sbjct: 551 QLARMERGKLTQEEFMKGVLKLSREVTEDI 580