Pairwise Alignments

Query, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

Subject, 894 a.a., DNA topoisomerase I (RefSeq) from Shewanella sp. ANA-3

 Score =  113 bits (282), Expect = 4e-29
 Identities = 160/651 (24%), Positives = 267/651 (41%), Gaps = 103/651 (15%)

Query: 4   LFIAEKPSLARAIADALPKPHKKEQGCIRCANGDIVTWCIGHLLEQVEPDAYDERYKKWN 63
           L I E P+ A+ I   L K               IV   +GH+ +     + D   K  +
Sbjct: 21  LVIVESPAKAKTINKYLGKEF-------------IVKSSVGHIRDLPTSSSSDGNEKVKS 67

Query: 64  MADLPIIPEQWQLRPRKSSSQQLTVVR--------------------KLLKE-------A 96
            A++  +  + + R +K    Q  V R                    K++KE       A
Sbjct: 68  AAEVKKMSPEEKARYKKVKEHQALVSRMGVNPEKGWAAKYQILPGKEKVVKELQALADSA 127

Query: 97  TQIIHAGDPDREGQLLVDEVIDYCKVPKSKKETVQRLLISDLNLSAVKRALQGLRSNREF 156
            QI  A D DREG+ +   + +      S+    QR++ +++  SA++ A    + +   
Sbjct: 128 DQIYLATDLDREGEAIAWHLQEVIGGDPSR---YQRVVFNEITKSAIQEAFS--KPSSLD 182

Query: 157 IPLSVSALARSRADWLYGMNMSRAYTLLGKKAGYQGVLSVGRVQTPVLGLVVRRDEEIEH 216
             +  +  AR   D + G  +S    LL KK      LS GRVQ+  + LVV R+ EI+ 
Sbjct: 183 TNMVNAQQARRFLDRVVGFMVS---PLLWKKVARG--LSAGRVQSVAVRLVVERESEIKA 237

Query: 217 FIPHDYFTLDALIPYQNGTEYFDIRARWKPSEAC----LPWQDEEGRVTNRKLVDNVASR 272
           F+P +++ + A +                 SEA     + + D     TN +        
Sbjct: 238 FVPEEFWDVHAQL-------------NTPASEALRMEVVKYLDSAFEPTNEQQALAAVQA 284

Query: 273 IANQPATVTESEQDQTKQAAPLPYSLSALQIDAAKRYNFSAQQVLDLCQSLYEKHKLITY 332
           +++    V   E   T+     P+  S LQ  A+ R  F  ++ + + Q LYE    ITY
Sbjct: 285 LSSASFKVIAREDKATQSKPSAPFITSTLQQAASTRLGFGVKKTMMMAQRLYEAGH-ITY 343

Query: 333 PRSDCRYLPKEHLAQAPDVVAAIANNAQEMVTAVNDAD-LSLRSKAWNDSKVDAHHAIIP 391
            R+D   L +E L    +++       +E       A+ +   SK   +   +AH AI P
Sbjct: 344 MRTDSTNLSQEALDSVREMIG------KEYGAKYLPAEPIRYGSK---EGAQEAHEAIRP 394

Query: 392 TPKKASVNALSGHE---MKVYQLIARQYLMQFYPAAIYAEAKLVFNIAGGIFIAKGRQLL 448
           +  K    AL+  E    ++Y+LI RQ++      A Y   KL          A GR L 
Sbjct: 395 SNVKVEAAALTDMERDAQRLYELIWRQFVSCQMTPAQYDATKLTVKAGDYELKATGRILR 454

Query: 449 SAGW-KVLTGQQDEQEECVDKVPPLPVGIVLQCREGEIKQRQTEPPRHFTEATLLQAMTG 507
             GW +V T  + + EE  + +P +  G +L   E E KQ  T+PP  ++EA+L+     
Sbjct: 455 FDGWTRVQTALKKKNEED-NTLPSVNEGDLLSLVELEPKQHFTKPPARYSEASLV----- 508

Query: 508 IARFVADKELKKILRETDGLGTEATRAGILDTLFKRGLLQRDNKLIKSTPAGRGLIHALP 567
                  KEL+K      G+G  +T A I+ T+ +RG ++ +N+   +   G  +   L 
Sbjct: 509 -------KELEK-----RGIGRPSTYATIISTIQERGYVKVENRRFYAEKMGEIVSERLV 556

Query: 568 ---SEATYPDMTAHWEHQLQAIAEKGQAYQPFMQTLQGRLEQLIEQVQVAP 615
              +E    D TA  E  L  +A     ++  +        + +E+ ++AP
Sbjct: 557 GSFAELMSYDFTASMEQTLDDVASGELDWKKVLDGFYADFTKQLEKAELAP 607