Pairwise Alignments

Query, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

Subject, 704 a.a., DNA topoisomerase III (RefSeq) from Shewanella sp. ANA-3

 Score =  694 bits (1792), Expect = 0.0
 Identities = 372/663 (56%), Positives = 458/663 (69%), Gaps = 30/663 (4%)

Query: 4   LFIAEKPSLARAIADALPKPHKKEQGCIRCANGDIVTWCIGHLLEQVEPDAYDERYKKWN 63
           L+IAEKPSL RAIAD LPKPHKK  G I  A G+ V+WC+GHLLEQ EPDAY+  +K W 
Sbjct: 3   LYIAEKPSLGRAIADVLPKPHKKGDGFIEDAQGNCVSWCVGHLLEQAEPDAYNPEFKSWK 62

Query: 64  MADLPIIPEQWQLRPRKSSSQQLTVVRKLLKEATQIIHAGDPDREGQLLVDEVIDYCKVP 123
              LPI+PE+WQL+P+ ++  QLTV++KL+K+A  +++AGDPDREGQLLVDEVI Y  V 
Sbjct: 63  FEHLPIVPEKWQLKPKAATRSQLTVLKKLVKQADTLVNAGDPDREGQLLVDEVIAYLGVT 122

Query: 124 KSKKETVQRLLISDLNLSAVKRALQGLRSNREFIPLSVSALARSRADWLYGMNMSRAYTL 183
             K +  QRLLISDLN  AVKRAL  LRSNREFIPLS SALARSRADWLYGMNM+RAYT+
Sbjct: 123 GDKLQQTQRLLISDLNPQAVKRALSQLRSNREFIPLSTSALARSRADWLYGMNMTRAYTI 182

Query: 184 LGKKAGYQGVLSVGRVQTPVLGLVVRRDEEIEHFIPHDYF-TLDALIPYQNGTEYFDIRA 242
            GKK GYQGVLSVGRVQTP+LGL+VRRDEEI +F    ++  L  L+  ++ T      A
Sbjct: 183 QGKKVGYQGVLSVGRVQTPLLGLIVRRDEEIANFQSKPFYEVLAHLVTDKDQT----FTA 238

Query: 243 RWKPSEACLPWQDEEGRVTNRKLVDNVASRIANQPATVTESEQDQTKQAAPLPYSLSALQ 302
           +W+PSEACLP+ DEEGRV  + L  NV  RI ++PA VT+      +Q  PLPYSLSALQ
Sbjct: 239 KWQPSEACLPYMDEEGRVLAKGLAQNVVRRITDKPAKVTQLSTKDKQQNPPLPYSLSALQ 298

Query: 303 IDAAKRYNFSAQQVLDLCQSLYEKHKLITYPRSDCRYLPKEHLAQAPDVVAAIANNAQEM 362
           IDAAKR+  SA+ VLD CQSLYE+HKLITYPRSD RYLP E  A A  V+AAI   A E+
Sbjct: 299 IDAAKRFGMSAKDVLDTCQSLYERHKLITYPRSDSRYLPTEQHALASGVLAAIMGGAPEL 358

Query: 363 VTAVNDADLSLRSKAWNDSKVDAHHAIIPTPKKASVNALSGHEMKVYQLIARQYLMQFYP 422
           V      +  L+SKAW+D KVDAHHAIIPT K+ ++  LS  E ++Y  IARQYL QFYP
Sbjct: 359 VAHAEAPNPRLKSKAWDDKKVDAHHAIIPTEKQPNLAGLSQRERQLYLHIARQYLAQFYP 418

Query: 423 AAIYAEAKLVFNIAGGIFIAKGRQLLSAGWKVLTGQQD-------------------EQE 463
           A  Y+E  +   I GG+F  K +Q  S GWK L  +++                   E+ 
Sbjct: 419 AYCYSETAVEVTIEGGLFKTKAKQDKSLGWKQLFAREENERKDASSAASFAQGDKDAEEG 478

Query: 464 ECVDKVPPLPVGIVLQCREGEIKQRQTEPPRHFTEATLLQAMTGIARFVADKELKKILRE 523
           E V ++PPL +G VL C +GE+ ++QT+PP+ FT+ATLL AMTGI R+V D E++KIL+E
Sbjct: 479 EYVGQLPPLTLGQVLHCHQGELVEKQTQPPKAFTDATLLSAMTGINRYVTDPEIRKILKE 538

Query: 524 TDGLGTEATRAGILDTLFKRGLLQRDNKLIKSTPAGRGLIHALPSEATYPDMTAHWEHQL 583
           TDGLGTEATRAGI++ LFKRG +QR  K I +T  G+GLI++LP  AT PDMTA WE  L
Sbjct: 539 TDGLGTEATRAGIIELLFKRGFIQRQGKSIVATEIGKGLINSLPISATTPDMTALWEASL 598

Query: 584 QAIAEKGQAYQPFMQTLQGRLEQLIEQVQVAPVPVSLQALPAVSKPAFKR--TRRAPKSK 641
             I  K  +Y  FMQ L G L  LIE    A +P +L  L       FKR  T+++   K
Sbjct: 599 NGICHKEISYHGFMQPLLGTLNNLIENAG-AQLPSALNGLKG---QGFKRAATKKSGYRK 654

Query: 642 ART 644
           A T
Sbjct: 655 AGT 657