Pairwise Alignments

Query, 306 a.a., histone deacetylase from Vibrio cholerae E7946 ATCC 55056

Subject, 306 a.a., Deacetylases, including yeast histone deacetylase and acetoin utilization protein from Pseudomonas fluorescens FW300-N2E2

 Score =  243 bits (621), Expect = 3e-69
 Identities = 123/293 (41%), Positives = 174/293 (59%), Gaps = 6/293 (2%)

Query: 2   IPLIYHPIYSQLDLPVGHRYPINKYRLLYEEIVRQREQSEAWQASFEFHTPIAAELSRIT 61
           +PLIYH  YS  + P  HR+P++K+RLL + +V      +A     +   P       + 
Sbjct: 3   LPLIYHEDYSP-EFPPDHRFPMDKFRLLRDHLVDSGLTRDA-----DLLRPSLCPPDILA 56

Query: 62  RLHDPDYVQALLEGTLSAAKMRRIGFPWSKPLIERTLYSVGGTCLTVEQALQSGVAIHLS 121
             HD  Y++  + G LS    RR+G PWS+ L  RT+ +VGG+ L  EQAL+ G+A HL+
Sbjct: 57  LAHDRAYIERYMGGELSREDQRRLGLPWSEALARRTVRAVGGSLLAAEQALEHGLACHLA 116

Query: 122 GGYHHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHHGDGTATLCAERDEII 181
           GG HHAH D  +GFC+FNDLA+ + + L+   V +VLI D DVH GDGTA +  +  + +
Sbjct: 117 GGTHHAHYDHPAGFCIFNDLAVISRYFLASGRVSRVLIFDCDVHQGDGTARILHDTPDAV 176

Query: 182 TLSFHCDKNFPARKPASSMDVGYANQTGDEEFLSTFIQVVEMAVNLHRPDLILYDAGVDI 241
           T+S HC+KNFPARK  S  D+       D  +L+     +   + L++PDL+LYDAGVD+
Sbjct: 177 TVSLHCEKNFPARKAQSDWDIPLPMGMEDGAYLNVVDDALNYLLPLYQPDLVLYDAGVDV 236

Query: 242 HNDDELGYLSISQAAIAQRDRFMLGLAKQESIPIACVIGGGYREDHTALVPLH 294
           H DD LGYL ++ A +A RD  ++       IP+  VIGGGY +D  AL   H
Sbjct: 237 HKDDALGYLKLTDAGLAARDESVMRHCLGRDIPVVGVIGGGYSKDRQALARRH 289