Pairwise Alignments

Query, 306 a.a., histone deacetylase from Vibrio cholerae E7946 ATCC 55056

Subject, 343 a.a., Deacetylases, including yeast histone deacetylase and acetoin utilization protein from Pseudomonas fluorescens FW300-N2E2

 Score = 63.5 bits (153), Expect = 7e-15
 Identities = 59/208 (28%), Positives = 87/208 (41%), Gaps = 36/208 (17%)

Query: 99  YSVGGTCLTVEQALQSGV----AIHLSGGYHHAHADFGSGFCLFNDLAIAAHFALSLPSV 154
           YS     LT +  +Q G     A+    G HHA  D   G+C  N+ AIAA   L     
Sbjct: 129 YSAAQVALTAQAEIQRGARSAFALCRPPG-HHAAGDLMGGYCYLNNAAIAAQAFLD-QGH 186

Query: 155 DKVLIIDSDVHHGDGTATLCAERDEIITLSF--HCDKNFPARKPASSMDVGYANQTGD-- 210
            KV I+D D HHG+GT ++  ER +++  S   H +  FP         +GYA++ G+  
Sbjct: 187 QKVAILDVDYHHGNGTQSIFYERSDVLFASIHGHPEAEFP-------FFLGYADEQGEGD 239

Query: 211 -EEF-----------LSTFIQVVEMA---VNLHRPDLILYDAGVDIHNDDELGYLSISQA 255
            E F             T+   +E A   +  +  D+I+   GVD   DD +    +   
Sbjct: 240 GEGFNFNYPLPAGSGWDTWSAALEQACGQIRGYDADVIVVSLGVDTFKDDPISQFKLDSP 299

Query: 256 AIAQRDRFMLGLAKQESIPIACVIGGGY 283
                 + +  L K    P   V+ GGY
Sbjct: 300 DYLAMGKRIAALGK----PTLFVMEGGY 323