Pairwise Alignments

Query, 306 a.a., histone deacetylase from Vibrio cholerae E7946 ATCC 55056

Subject, 306 a.a., Deacetylases, including yeast histone deacetylase and acetoin utilization protein from Pseudomonas fluorescens FW300-N1B4

 Score =  252 bits (644), Expect = 7e-72
 Identities = 126/293 (43%), Positives = 173/293 (59%), Gaps = 6/293 (2%)

Query: 2   IPLIYHPIYSQLDLPVGHRYPINKYRLLYEEIVRQREQSEAWQASFEFHTPIAAELSRIT 61
           +PLIYH  YS  + P  HR+P++K+RLL + +V             +   P       + 
Sbjct: 3   LPLIYHEDYSP-EFPADHRFPMDKFRLLRDHLV-----DSGLTRDTDLLRPDLCPPEILA 56

Query: 62  RLHDPDYVQALLEGTLSAAKMRRIGFPWSKPLIERTLYSVGGTCLTVEQALQSGVAIHLS 121
             HDP Y++  + G LS    RR+G PWS+ L  RT+ +VGG+ L  EQAL+ G+A HL+
Sbjct: 57  LAHDPAYIERYMGGELSREDQRRLGLPWSEALARRTVRAVGGSLLAAEQALEHGLACHLA 116

Query: 122 GGYHHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHHGDGTATLCAERDEII 181
           GG HHAH D  +GFC+FNDLA+ +H+ L    V++VLI D DVH GDGTA +     E I
Sbjct: 117 GGTHHAHYDHPAGFCIFNDLAVISHYLLESGRVNRVLIFDCDVHQGDGTARILHNTPEAI 176

Query: 182 TLSFHCDKNFPARKPASSMDVGYANQTGDEEFLSTFIQVVEMAVNLHRPDLILYDAGVDI 241
           T+S HC+KNFPARK  S  D+      GD ++L      +   + L++PDL+LYDAGVD+
Sbjct: 177 TVSLHCEKNFPARKAESDWDIPLPMGMGDADYLKVVDDALNYLLPLYQPDLVLYDAGVDV 236

Query: 242 HNDDELGYLSISQAAIAQRDRFMLGLAKQESIPIACVIGGGYREDHTALVPLH 294
           H DD LGYL ++   +A RD  ++       IP+  VIGGGY +D  AL   H
Sbjct: 237 HKDDALGYLKLTDEGVAIRDESVMRHCLGRDIPVVGVIGGGYSKDRKALARRH 289