Pairwise Alignments

Query, 306 a.a., histone deacetylase from Vibrio cholerae E7946 ATCC 55056

Subject, 306 a.a., Deacetylases, including yeast histone deacetylase and acetoin utilization protein from Pseudomonas stutzeri RCH2

 Score =  252 bits (643), Expect = 9e-72
 Identities = 133/306 (43%), Positives = 180/306 (58%), Gaps = 12/306 (3%)

Query: 2   IPLIYHPIYSQLDLPVGHRYPINKYRLLYEEIVRQREQSEAWQASFEFHTPIAAELSR-- 59
           +PL++H  YS   LP GHR+P+ K+RLL + +V     ++A        T +  EL    
Sbjct: 3   LPLVFHDDYSP-PLPPGHRFPMEKFRLLRDHLVALGLTTDA--------TLLRPELCGHD 53

Query: 60  -ITRLHDPDYVQALLEGTLSAAKMRRIGFPWSKPLIERTLYSVGGTCLTVEQALQSGVAI 118
            +   HDPDYV     G +   ++RR+G PWS  L +RT+ +VGG+ L  EQALQ G+A 
Sbjct: 54  ILALAHDPDYVARYCSGEMGRDELRRLGLPWSPELAQRTVRAVGGSLLAAEQALQHGLAC 113

Query: 119 HLSGGYHHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHHGDGTATLCAERD 178
           HL+GG HHAH D  SGFC+FNDLA+ A + L    V +VLI D DVH GDGTA +     
Sbjct: 114 HLAGGTHHAHRDHASGFCIFNDLAVIALYLLESGRVGRVLIFDCDVHQGDGTARILENIP 173

Query: 179 EIITLSFHCDKNFPARKPASSMDVGYANQTGDEEFLSTFIQVVEMAVNLHRPDLILYDAG 238
           + +T+S HC+KNFP RK  S  D+      GDE +L      +   + +++PDL+LYDAG
Sbjct: 174 DAVTVSLHCEKNFPTRKAHSDWDIPLPPGMGDEAYLKVVHDTLNYLLPIYQPDLVLYDAG 233

Query: 239 VDIHNDDELGYLSISQAAIAQRDRFMLGLAKQESIPIACVIGGGYREDHTALVPLHLELL 298
           VD+H DD LG LS+S A +A RD  +L       IP+  +IGGGY +D   L   H  L 
Sbjct: 234 VDVHRDDALGLLSLSDAGLAARDSAVLDHCLGRDIPVVGLIGGGYDKDRALLARRHATLH 293

Query: 299 KAALSA 304
            +A SA
Sbjct: 294 VSAHSA 299