Pairwise Alignments

Query, 306 a.a., histone deacetylase from Vibrio cholerae E7946 ATCC 55056

Subject, 305 a.a., Histone deacetylase superfamily from Pseudomonas syringae pv. syringae B728a

 Score =  266 bits (681), Expect = 3e-76
 Identities = 131/293 (44%), Positives = 180/293 (61%), Gaps = 6/293 (2%)

Query: 2   IPLIYHPIYSQLDLPVGHRYPINKYRLLYEEIVRQREQSEAWQASFEFHTPIAAELSRIT 61
           +PLIYH  YS  D P  HR+P++K+RLL + ++     S+      +   P       + 
Sbjct: 3   LPLIYHEDYSP-DFPADHRFPMDKFRLLRDYLIDSGLTSDV-----QLMRPELCPADILA 56

Query: 62  RLHDPDYVQALLEGTLSAAKMRRIGFPWSKPLIERTLYSVGGTCLTVEQALQSGVAIHLS 121
             HDP Y+   L G LS    RR+G PWS+ L  RT+ +VGG+ LT EQAL+ G+A HL+
Sbjct: 57  LAHDPSYISRYLSGDLSREDQRRLGLPWSEALARRTIRAVGGSLLTAEQALKHGLACHLA 116

Query: 122 GGYHHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHHGDGTATLCAERDEII 181
           GG HHAH D+ +GFC+FNDLA+ + + L    VDKVLI D DVH GDGTA + A+ ++ I
Sbjct: 117 GGTHHAHYDYPAGFCIFNDLAVISQYLLQSGRVDKVLIFDCDVHQGDGTARILADTEDAI 176

Query: 182 TLSFHCDKNFPARKPASSMDVGYANQTGDEEFLSTFIQVVEMAVNLHRPDLILYDAGVDI 241
           T+S HC+KNFPARK  S  D+      GD ++L+    ++   + L++PDL+LYDAGVD+
Sbjct: 177 TVSLHCEKNFPARKAQSDWDIPLPMGMGDADYLNVVDDLLNYLLPLYKPDLVLYDAGVDV 236

Query: 242 HNDDELGYLSISQAAIAQRDRFMLGLAKQESIPIACVIGGGYREDHTALVPLH 294
           H DD LGYL ++   +A RD  +L       IP+  VIGGGY +D  AL   H
Sbjct: 237 HKDDALGYLQLTDQGLANRDEAVLRHCLSRDIPVMGVIGGGYSKDRLALARRH 289