Pairwise Alignments

Query, 306 a.a., histone deacetylase from Vibrio cholerae E7946 ATCC 55056

Subject, 304 a.a., histone deacetylase/AcuC/AphA family protein-like from Synechococcus elongatus PCC 7942

 Score =  254 bits (650), Expect = 1e-72
 Identities = 131/300 (43%), Positives = 183/300 (61%), Gaps = 6/300 (2%)

Query: 2   IPLIYHPIYSQLDLPVGHRYPINKYRLLYEEIVRQREQSEAWQASFEFHTPIAAELSRIT 61
           +PL+YHP YS   LP  HR+P+ K+RLL++ ++R+R          +FH P    L  +T
Sbjct: 3   LPLVYHPGYSA-PLPSTHRFPMAKFRLLHDRLLRERVVYPQ-----QFHQPDRPPLEWLT 56

Query: 62  RLHDPDYVQALLEGTLSAAKMRRIGFPWSKPLIERTLYSVGGTCLTVEQALQSGVAIHLS 121
            +H  DY+QA  +GTL    +RRIG PWS  L+ERT  +VGGT LT   ALQ G+A +L+
Sbjct: 57  SVHSLDYIQAYSQGTLDERSLRRIGLPWSPALVERTWIAVGGTILTARLALQQGLACNLA 116

Query: 122 GGYHHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHHGDGTATLCAERDEII 181
           GG HHA  D+GSGFC+FND AIAA   L    V+++LI+D DVH GDGTA +  +   + 
Sbjct: 117 GGTHHAFPDYGSGFCIFNDCAIAARLLLQERLVERILIVDLDVHQGDGTAWIFQDDPRVF 176

Query: 182 TLSFHCDKNFPARKPASSMDVGYANQTGDEEFLSTFIQVVEMAVNLHRPDLILYDAGVDI 241
           T S HC+ NFPARK  S  DV       D+ +L    Q +   ++  RP+L++Y+AGVD 
Sbjct: 177 TFSMHCEANFPARKQHSDCDVPLPEGMEDDAYLQQLAQYLPDLLSQVRPNLVIYNAGVDP 236

Query: 242 HNDDELGYLSISQAAIAQRDRFMLGLAKQESIPIACVIGGGYREDHTALVPLHLELLKAA 301
           H  D LG L+++   + +R+  +L    ++  P+A V+GGGY ED  ALV  H    +AA
Sbjct: 237 HGGDRLGKLALTDTGLFRREMQVLETCVRQGYPVAAVLGGGYCEDFNALVYRHSLCQRAA 296