Pairwise Alignments

Query, 306 a.a., histone deacetylase from Vibrio cholerae E7946 ATCC 55056

Subject, 305 a.a., histone deacetylase/AcuC/AphA family protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  298 bits (764), Expect = 8e-86
 Identities = 144/301 (47%), Positives = 202/301 (67%), Gaps = 5/301 (1%)

Query: 1   MIPLIYHPIYSQLDLPVGHRYPINKYRLLYEEIVRQREQSEAWQASFEFHTPIAAELSRI 60
           MIPL+YH  YS+L LP  H++PI KY  L + ++      EA     +F +P   + + I
Sbjct: 1   MIPLVYHTSYSKLVLPPKHQFPITKYAHLRQHLLEYGHALEA-----QFVSPDPVDATFI 55

Query: 61  TRLHDPDYVQALLEGTLSAAKMRRIGFPWSKPLIERTLYSVGGTCLTVEQALQSGVAIHL 120
             +HD DYV A L GTLS   +RR+GFP S  L+ERTL+S+GG+ LT + A+  G+A+HL
Sbjct: 56  KGVHDSDYVDAFLNGTLSPQAIRRLGFPLSHALVERTLHSLGGSLLTAKLAMSRGIALHL 115

Query: 121 SGGYHHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHHGDGTATLCAERDEI 180
           +GGYHHAH DFGSG+C+FNDL +AA   +      +V+I+D DVH GDGTATLCA+ D+I
Sbjct: 116 AGGYHHAHRDFGSGYCVFNDLVLAARHLIDEGHASRVMILDCDVHQGDGTATLCADMDDI 175

Query: 181 ITLSFHCDKNFPARKPASSMDVGYANQTGDEEFLSTFIQVVEMAVNLHRPDLILYDAGVD 240
           I++S HCD NFP+RKPAS  DV       D+++L    QV +  ++L +PD+ILYDAGVD
Sbjct: 176 ISVSVHCDSNFPSRKPASDYDVPLPKGLEDDDYLDALEQVFQYLLHLEKPDVILYDAGVD 235

Query: 241 IHNDDELGYLSISQAAIAQRDRFMLGLAKQESIPIACVIGGGYREDHTALVPLHLELLKA 300
           +H+DD LG+L+IS   + +RD+ ++ +A+   +P+A VIGGGY  +   L   H +L  A
Sbjct: 236 VHHDDRLGHLNISTQGLLRRDKLVITMARNAGLPLAAVIGGGYSANPLHLSERHSQLFIA 295

Query: 301 A 301
           A
Sbjct: 296 A 296