Pairwise Alignments

Query, 306 a.a., histone deacetylase from Vibrio cholerae E7946 ATCC 55056

Subject, 342 a.a., Histone deacetylase superfamily (NCBI) from Rhodospirillum rubrum S1H

 Score = 62.0 bits (149), Expect = 2e-14
 Identities = 52/191 (27%), Positives = 82/191 (42%), Gaps = 20/191 (10%)

Query: 106 LTVEQALQSGVAIHLSGGYHHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVH 165
           L V     S  A+    G+H A A  G G+C  N+ AIAA   L      +V I+D D H
Sbjct: 140 LAVATGAHSAFALCRPPGHHAARALAG-GYCYLNNAAIAAQ-TLRDQGAGRVAILDVDYH 197

Query: 166 HGDGTATLCAERDEIITLSFHCDKNF-------------PARKPASSMDVGYANQTGDEE 212
           HG+GT  +  ER +++ +S H D  F                   +++++  A  T + E
Sbjct: 198 HGNGTQEIFYERGDVLFVSLHADPAFGYPYYTGYGDQSGRGAGEGTTLNLPLAAGTTEAE 257

Query: 213 FLSTFIQVVEMAVNLHRPDLILYDAGVDIHNDDELGYLSISQAAIAQRDRFMLGLAKQES 272
           +L+  ++     +    PD ++   GVD    D L +  +S  A       + GL     
Sbjct: 258 WLAA-LEHGLARLGEFAPDAVVVSLGVDTWAGDPLSHFKVSARAFPALGARLAGL----G 312

Query: 273 IPIACVIGGGY 283
           +P   V+ GGY
Sbjct: 313 LPTLFVMEGGY 323