Pairwise Alignments

Query, 306 a.a., histone deacetylase from Vibrio cholerae E7946 ATCC 55056

Subject, 394 a.a., Deacetylases, including yeast histone deacetylase and acetoin utilization protein from Phaeobacter inhibens DSM 17395

 Score = 84.7 bits (208), Expect = 3e-21
 Identities = 66/280 (23%), Positives = 116/280 (41%), Gaps = 24/280 (8%)

Query: 18  GHRYPINKYRLLYEEIVRQREQSEAWQASFEFHTPIAAELSRITRLHDPDYV-------- 69
           G  +P+   R+     V    ++  W  + ++ T   A+ + + R H P+Y+        
Sbjct: 40  GRMHPLRVPRV---STVMDLTRALGWLPAAQYQTSPRAKPAALERWHSPEYIAALQAAER 96

Query: 70  -QALLEGTLSAAKMRRIGFPWSKPLIERTLYSVGGTCLTVEQALQSGVAIHLSGGYHHAH 128
            QA+ E   +   +  I  P    +  R   + GG+ L  E+  Q GV  + +GG HH  
Sbjct: 97  AQAVSEEVKARHHIGTISNPVFPEIFRRPATAAGGSILAGERLAQGGVIYNPAGGTHHGM 156

Query: 129 ADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHHGDGTATLCAERDEIITLSFHCD 188
            D  +GFC  ND  + A  +L      ++  +D D HH DG     A   +++ +S H +
Sbjct: 157 PDRANGFCYLND-PVLAMLSLRHHGAKRIAYVDIDAHHADGVEHGFAGDPDVLMISTHEE 215

Query: 189 KNFPAR------KPASSMDVGYANQTGDEEFLSTFIQVVEMAVNLHRPDLILYDAGVDIH 242
             +P           S++++       D E      +++  AV    PD ++   G D  
Sbjct: 216 NLWPKTGKLVDDAGGSALNLPVPRGFNDSEMAYVLEELILPAVVNFAPDAVVLQCGADAV 275

Query: 243 NDDELGYLSISQAAIAQRDRFMLGLAKQESIPIACVIGGG 282
            +D L +L +S  A      + +  A +   P   V+GGG
Sbjct: 276 TEDPLAHLDLSNTA-----HWSVVAALRSLAPRYLVLGGG 310