Pairwise Alignments

Query, 306 a.a., histone deacetylase from Vibrio cholerae E7946 ATCC 55056

Subject, 300 a.a., histone deacetylase superfamily protein (RefSeq) from Shewanella loihica PV-4

 Score =  294 bits (752), Expect = 2e-84
 Identities = 151/302 (50%), Positives = 195/302 (64%), Gaps = 7/302 (2%)

Query: 1   MIPLIYHPIYSQLDLPVGHRYPINKYRLLYEEIV-RQREQSEAWQASFEFHTPIAAELSR 59
           M+PL+YH  YSQL LP  HR+PI KY+ LY+ ++ RQ     A      FH+P A  L  
Sbjct: 1   MVPLVYHASYSQLALPHHHRFPITKYQALYQYLLDRQIVDPTA------FHSPEAVSLEW 54

Query: 60  ITRLHDPDYVQALLEGTLSAAKMRRIGFPWSKPLIERTLYSVGGTCLTVEQALQSGVAIH 119
           +  +H PDYV   +E  L    +RR+GFP S+ L +RTLYSVGGT L  E A++ GVA+ 
Sbjct: 55  LKSIHCPDYVMQFIEQRLPDKAVRRLGFPLSERLTQRTLYSVGGTHLACELAVRHGVALQ 114

Query: 120 LSGGYHHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHHGDGTATLCAERDE 179
           LSGGYHHAH  FGSG+C+FNDL  AA  A SL  +  VLI D DVH GDGTA +    D 
Sbjct: 115 LSGGYHHAHYQFGSGYCVFNDLISAALHAQSLAGIVTVLIFDCDVHQGDGTAAMGQAYDN 174

Query: 180 IITLSFHCDKNFPARKPASSMDVGYANQTGDEEFLSTFIQVVEMAVNLHRPDLILYDAGV 239
           + T S HC +NFPARK  S +D+  +   GDEE+L    Q + +A+ L++PDLI+YDAGV
Sbjct: 175 LYTCSIHCQENFPARKQTSDLDLELSRGVGDEEYLEAVAQTLALAIRLYQPDLIIYDAGV 234

Query: 240 DIHNDDELGYLSISQAAIAQRDRFMLGLAKQESIPIACVIGGGYREDHTALVPLHLELLK 299
           D+H  D LG+L+I+   I QRDR +L  AK  SIPIACV+GGGY ++   L   H ++  
Sbjct: 235 DVHQADRLGHLNITTEGIYQRDRLVLDNAKAASIPIACVVGGGYSKEIEVLAERHAQVFI 294

Query: 300 AA 301
           AA
Sbjct: 295 AA 296