Pairwise Alignments

Query, 306 a.a., histone deacetylase from Vibrio cholerae E7946 ATCC 55056

Subject, 304 a.a., histone deacetylase/AcuC/AphA family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  305 bits (780), Expect = 1e-87
 Identities = 149/301 (49%), Positives = 198/301 (65%), Gaps = 5/301 (1%)

Query: 1   MIPLIYHPIYSQLDLPVGHRYPINKYRLLYEEIVRQREQSEAWQASFEFHTPIAAELSRI 60
           MIPL+YH  YS+L LP+ HR+P  KY  LY+ ++  +  +       +FHTP       I
Sbjct: 1   MIPLVYHASYSKLALPIHHRFPTTKYAHLYQYLLDNQLATPT-----QFHTPTPMTAEEI 55

Query: 61  TRLHDPDYVQALLEGTLSAAKMRRIGFPWSKPLIERTLYSVGGTCLTVEQALQSGVAIHL 120
            ++H  DYV+  ++GTL+ + +RRIGFPWS+ L+ERTL+S+ GT LT   ALQ+G+A+HL
Sbjct: 56  MQVHHRDYVEQFIDGTLATSALRRIGFPWSEALVERTLHSLAGTSLTAALALQTGIALHL 115

Query: 121 SGGYHHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHHGDGTATLCAERDEI 180
           +GGYHHAH +FGSG+C+FNDL IAA   +    + K+LI D DVH GDGTATL      I
Sbjct: 116 TGGYHHAHYEFGSGYCIFNDLIIAARKLIIEQQLHKILIFDCDVHQGDGTATLSQLHQGI 175

Query: 181 ITLSFHCDKNFPARKPASSMDVGYANQTGDEEFLSTFIQVVEMAVNLHRPDLILYDAGVD 240
           I+ S HC  NFP+RK  S  D+     T D  +L T  Q +E+ + LH+PDLILYDAGVD
Sbjct: 176 ISCSIHCKDNFPSRKQHSHYDIELVKGTDDSAYLDTVEQTLELLIRLHQPDLILYDAGVD 235

Query: 241 IHNDDELGYLSISQAAIAQRDRFMLGLAKQESIPIACVIGGGYREDHTALVPLHLELLKA 300
           IH DD+LG+L ISQ  + QRD  +L +A+  +IP+A VIGGGY  D   L   H +L  A
Sbjct: 236 IHQDDDLGHLQISQQGLYQRDVTVLSMARAANIPVAAVIGGGYSRDALQLSQRHSQLFIA 295

Query: 301 A 301
           A
Sbjct: 296 A 296