Pairwise Alignments

Query, 306 a.a., histone deacetylase from Vibrio cholerae E7946 ATCC 55056

Subject, 439 a.a., histone deacetylase family protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 58.5 bits (140), Expect = 3e-13
 Identities = 71/299 (23%), Positives = 111/299 (37%), Gaps = 52/299 (17%)

Query: 4   LIYHPIYSQLDLPVGHRYPINKYRLLYEEIVRQREQSEAWQASFEFHTPIAAELSRITRL 63
           +I+ P +   D  +   +P  + RLLY +  + RE+     A    H P  A    + R+
Sbjct: 10  VIFFPAF---DWAISPTHPEREERLLYTQD-QLREEGLFDIAGITEHKPDVATREDVERV 65

Query: 64  HD--PDYVQALLEGTLSAAKMRRIGFPWSKPLIERTLYSVGGTC----LTVEQALQSGVA 117
           H   PD                      S    +  L S GG      L +E+      A
Sbjct: 66  HFCLPDV---------------------SSVCTKSHLVSAGGAIKAARLVMEKRADKAFA 104

Query: 118 IHLSGGYHHAHADFGS-GFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHHGDGTATLCAE 176
           +    G+H      G+ GFC  N  A+            +V I+D+D HHGDGT  +   
Sbjct: 105 LIRPPGHHAMRVVHGNRGFCNINIEAVMLEHIREQYGRLRVAIVDTDCHHGDGTQDIYWH 164

Query: 177 RDEIITLSFHCD-------KNFP-----ARKPASSMDVGYANQTGDEEFLSTFIQVVEMA 224
             + + +S H D         FP           ++++     T D  FL     VV   
Sbjct: 165 DRDTLFISLHQDGRTLYPGTGFPQELGGPNAMGRTINIPLPPGTSDRGFLHVIEHVVRPI 224

Query: 225 VNLHRPDLILYDAGVDIHNDDELGYLSISQAAIAQRDRFMLGLAKQESIPIACVIGGGY 283
           ++  +PDLI+  AG D H  D +  ++ +    A  +R +         P   V+ GGY
Sbjct: 225 LDDFKPDLIINSAGQDNHFSDPITNMNFTARGYAMLNRML--------DPDIAVLEGGY 275