Pairwise Alignments

Query, 306 a.a., histone deacetylase from Vibrio cholerae E7946 ATCC 55056

Subject, 313 a.a., histone deacetylase superfamily (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 75.5 bits (184), Expect = 2e-18
 Identities = 52/171 (30%), Positives = 76/171 (44%), Gaps = 10/171 (5%)

Query: 98  LYSVGGTCLTVEQALQSGVA---IHLSGGYHHAHADFGSGFCLFNDLAIAAHFALSLPSV 154
           L  VGG C  V+  L   V    +      HHA  +   GFCLF ++AI A  AL    +
Sbjct: 96  LRGVGGVCAAVDAVLAGEVGNAFVACRPPGHHAETETAMGFCLFGNIAIGAKRALDHHGL 155

Query: 155 DKVLIIDSDVHHGDGTATLCAERDEIITLSFHCDKNFP---ARKPASS----MDVGYANQ 207
            +V ++D DVHHG+GT  L  +      +S H    +P   AR    +     ++ +   
Sbjct: 156 SRVAVVDFDVHHGNGTQDLLWDEARAFFISSHQMPLYPGSGARHETGAHGNVFNLPFPPD 215

Query: 208 TGDEEFLSTFIQVVEMAVNLHRPDLILYDAGVDIHNDDELGYLSISQAAIA 258
           T    F   +   V  A+   RP+LIL  AG D H  D L  +++ +   A
Sbjct: 216 TAGPAFRRQYEAEVFPALENFRPELILVSAGFDAHRADPLAQMALVEEDFA 266