Pairwise Alignments

Query, 306 a.a., histone deacetylase from Vibrio cholerae E7946 ATCC 55056

Subject, 300 a.a., histone deacetylase superfamily protein (RefSeq) from Shewanella sp. ANA-3

 Score =  298 bits (763), Expect = 1e-85
 Identities = 148/301 (49%), Positives = 196/301 (65%), Gaps = 5/301 (1%)

Query: 1   MIPLIYHPIYSQLDLPVGHRYPINKYRLLYEEIVRQREQSEAWQASFEFHTPIAAELSRI 60
           MIPL++H  YS+L LP  HR+P  KY  LY+ ++  +    A     +FHTP       +
Sbjct: 1   MIPLVHHASYSKLALPSHHRFPTTKYARLYQYLLDNQLAVPA-----QFHTPSPMTAEDV 55

Query: 61  TRLHDPDYVQALLEGTLSAAKMRRIGFPWSKPLIERTLYSVGGTCLTVEQALQSGVAIHL 120
            ++H  DYV+  ++G L+ A +RRIGFPWS+ L+ERTL+SV GT LT   ALQ+G+A+HL
Sbjct: 56  MQVHQQDYVEQFIQGRLACAALRRIGFPWSEALVERTLHSVSGTSLTASLALQAGIALHL 115

Query: 121 SGGYHHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHHGDGTATLCAERDEI 180
           +GGYHHAH DFGSG+C+FNDL IAA   ++   + KVLI D DVH GDGTATL      I
Sbjct: 116 TGGYHHAHYDFGSGYCIFNDLIIAARKLMAEQQLHKVLIFDCDVHQGDGTATLSHRHQGI 175

Query: 181 ITLSFHCDKNFPARKPASSMDVGYANQTGDEEFLSTFIQVVEMAVNLHRPDLILYDAGVD 240
           I+ S H  +NFP+RK  S  D+     + D  +  T  Q +E+ + LH+PDLILYDAGVD
Sbjct: 176 ISCSIHGKENFPSRKQQSHYDIELTKGSDDSAYQETVEQTLELLIRLHQPDLILYDAGVD 235

Query: 241 IHNDDELGYLSISQAAIAQRDRFMLGLAKQESIPIACVIGGGYREDHTALVPLHLELLKA 300
           IH DD+LG+L IS+  + QRD  +L +AK  +IP+A VIGGGY  D   L   H +L  A
Sbjct: 236 IHQDDDLGHLMISKQGLYQRDLTVLSMAKAANIPVAAVIGGGYSRDELQLSQRHSQLFIA 295

Query: 301 A 301
           A
Sbjct: 296 A 296