Pairwise Alignments

Query, 600 a.a., DUF3413 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 596 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  363 bits (932), Expect = e-104
 Identities = 204/595 (34%), Positives = 331/595 (55%), Gaps = 19/595 (3%)

Query: 10  DRVSRLVGWGHWFAFFNIIAAMLIGTRYISQSPWPETLLGQLYLALSWVGHFGFLVFALY 69
           DRVSRL+ WGHWFAFFN + AM++GTRY+S   +PET  G  YLA+S +G F FL F  Y
Sbjct: 11  DRVSRLINWGHWFAFFNGLLAMIVGTRYLSSVGYPETWFGWGYLAVSTIGQFSFLAFIAY 70

Query: 70  LLVLFPLTFIIPSRSLFRFLAVCFSTLGLTVLLIDTQAYQIINLHLNPVVWELLFSDETS 129
           L+ LFPLT I+P   + R LA   +TL L +LL DT  Y    +HL+P  +++ ++D ++
Sbjct: 71  LICLFPLTLILPYSKILRGLAAVIATLSLCLLLYDTIVYADYGMHLSPFAFDIAWADLSA 130

Query: 130 SVSADLQHLFVVLPL-IFLLELGLSEWVWRKQRKLSHKRIGRPLAAVFFFSFIASHLIYV 188
            +       ++V P+ I  +EL  + ++W++  K+    +G  + A     F++SHLI++
Sbjct: 131 LLHGT---SYIVTPIAILAIELTAANFLWKRIEKIQKLNLGNKVIAFVGVCFVSSHLIHI 187

Query: 189 WSDAYLYSPVTSQRANFPLSYPMTAKSFMEKHGLLDKEEYSKRLAEQNSDIDGLIYPLEP 248
           W+DA   + +T     +PLSYP TA+SFME HG+    + +    + ++    L YP++P
Sbjct: 188 WADAADITEITRFDDTYPLSYPATARSFMESHGIDGSSQINDEATQASNT---LSYPIQP 244

Query: 249 LEFSRRANNLNVLIVSINNLRADALTPELMPNTYQFANENLNFTNHYSSSNDM-FGLFGL 307
           L+    + + NVL+++I++LRAD +  + MP  +Q+  +N +FT HYS  N    G+F L
Sbjct: 245 LQCQADSKS-NVLMLTIDSLRADMVDAKTMPFLHQYTEQNQSFTQHYSGGNQFKTGMFSL 303

Query: 308 FYGLPSTYASSVRVQGNAPLLIDVMKKNDYQFGLFSGNNFADPLYKETMFRSLPIEAIAV 367
            YGL  +Y  +      +PL+I   K+  Y+ GLF      +    + MF          
Sbjct: 304 LYGLQGSYGDARIFNNTSPLMIRSFKQAGYELGLFIPETNLNLRSAQAMFNDFTPVIAEE 363

Query: 368 TNDESSPDEQAVQRWAEWLNVGQKQPWFSYLELTTVEEFSE----LSSAQESAEDRLRSA 423
           TN  +  D  +V  + +W +  Q++PWF+ + L   E F      L      A+  L+ A
Sbjct: 364 TNGSAEADILSVGHFKQWQS-AQQRPWFALVNLKAPENFDTPVGFLGIETVKADPNLKPA 422

Query: 424 YNLSVTQADQVINTVLEQLNSL--KLMDNTVVVITSNHGTEFNETKTNTWGSNTNYSRYQ 481
             +   Q  Q +N + +Q+ ++  +L  +T+VVIT  +G  F    +N+  +  N S   
Sbjct: 423 QKVLFNQYRQSLNFIDKQIQAIVSELPSDTLVVITGVNGKIFT---SNSDEALRNLSPES 479

Query: 482 LQVPMVIHWPGKVAGTYAHRSSHLDFSVTLMQDLLGVSSNPVDYSSGKNLFNESKRKWIL 541
           ++VP+VIHWP  +A    +R+SH     TLM  +LG ++N  DYS+G++L   SK  WI 
Sbjct: 480 VRVPLVIHWPNALASKVNYRTSHYGVVPTLMTHVLGCTNNTSDYSAGRSLLQPSKETWIY 539

Query: 542 AGDARELALITDTQTTVLDKFGNFKVYDGDYQRLKETNPTLPVLMQGLTELQRFY 596
            GD+R  A+   ++ TV+D+ G +++YD +++       + P L+Q L E +R Y
Sbjct: 540 IGDSRIFAIYQQSEITVIDRHGKYRIYDENFEHRLHKKMSAPELIQVLREGRRLY 594