Pairwise Alignments

Query, 333 a.a., nucleoid-associated protein from Vibrio cholerae E7946 ATCC 55056

Subject, 342 a.a., nucleoid-associated protein NdpA (RefSeq) from Shewanella amazonensis SB2B

 Score =  279 bits (714), Expect = 6e-80
 Identities = 141/338 (41%), Positives = 221/338 (65%), Gaps = 8/338 (2%)

Query: 1   MSLFLSNVILHQLRKNDNDELVVNYRAESLRNDTSTENLVAELHRVFNAKAGKGFGCF-- 58
           M++ +   I+H++ +    +L    R + L N  + E ++ ELH+ + +K+GKGFG F  
Sbjct: 1   MTIKVEQAIIHEIAQTHEGQLSCRLRPQPLLNSQAVELMLEELHQSYTSKSGKGFGFFGT 60

Query: 59  -----KSDSEFQLWLQEMRRGTLPFYEFSQQSAQRLKNELAKYPFADEGILVMAEYQSLA 113
                +++  F   L++   G L F EF+  +++ L++EL KY F+  G L++A Y  +A
Sbjct: 61  HGNDGEANPAFANCLKDYLDGGLGFVEFTGVASKLLQDELGKYDFSQGGFLLLACYSHMA 120

Query: 114 TDYLFIGLLPLNQSLKVTEGLDISATDYLDINKMDIVARIDLSSYETDKESKRYLSYIKG 173
           +DYLF+ LL    S+ V + ++++  ++LD+N + + ARIDL+ ++ DKES++Y+S+I+G
Sbjct: 121 SDYLFVALLSAKSSMTVLDDMELTQVNHLDLNNIQLAARIDLTEWQADKESRKYISFIRG 180

Query: 174 RVGRKVADFFLDFLQADIGLDTKQQNQVLMQAVEDFCADAKFEKEEVISYKKQVYEYCND 233
           R GRKVADFFLDF+    G++ K QN+ LM AVEDF A ++  K+E  + + +V+EYC++
Sbjct: 181 RAGRKVADFFLDFMGCVEGINPKAQNKSLMIAVEDFVAGSELTKDERQACRDKVFEYCSE 240

Query: 234 QIKAGDEVRVQELSGELPPSNEGVNFFDFTREQGYQLEESFPADRSTVRKLTKYVGAGGG 293
           +  AG EV +++L+ EL  S    +F+DF     Y LEE FP D+ST+R+L K+ G GGG
Sbjct: 241 RFDAGAEVDIKDLADELADSGMD-SFYDFATTGNYDLEEEFPVDKSTLRQLKKFSGTGGG 299

Query: 294 LNLSFDSLLLGERVFYDPETDTLTIKGTPPNLRDQLTR 331
           + +SFD   LGERV YDP +DTL IKG P NL+DQL R
Sbjct: 300 VTISFDGHHLGERVIYDPISDTLLIKGVPANLKDQLHR 337