Pairwise Alignments

Query, 333 a.a., nucleoid-associated protein from Vibrio cholerae E7946 ATCC 55056

Subject, 343 a.a., nucleoid-associated protein NdpA (RefSeq) from Shewanella loihica PV-4

 Score =  275 bits (704), Expect = 9e-79
 Identities = 135/338 (39%), Positives = 220/338 (65%), Gaps = 8/338 (2%)

Query: 1   MSLFLSNVILHQLRKNDNDELVVNYRAESLRNDTSTENLVAELHRVFNAKAGKGFGCF-- 58
           MS+ +   I+H + ++   +L    R + L N  + E ++ ELH+ + +K+GKGFG F  
Sbjct: 1   MSINVEQAIIHAISQDGEGQLSCRLRPQPLLNSQAVEAMLEELHQTYTSKSGKGFGHFGT 60

Query: 59  -----KSDSEFQLWLQEMRRGTLPFYEFSQQSAQRLKNELAKYPFADEGILVMAEYQSLA 113
                +++ +F+  L +   G L F EFS  + + L+ ELAKY F+  G L++A Y  + 
Sbjct: 61  HGEDGEANPQFKEALSQYLGGELGFVEFSGMAGKLLQEELAKYDFSQGGFLLLACYTYMT 120

Query: 114 TDYLFIGLLPLNQSLKVTEGLDISATDYLDINKMDIVARIDLSSYETDKESKRYLSYIKG 173
           +DYLF+ LL    S+ V + +++S   +LD+N + + ARIDL+ ++ D +S +Y+S+++G
Sbjct: 121 SDYLFVSLLNAKSSMTVLDDMELSQNTHLDLNNVQLAARIDLTEWQADPDSLKYISFVRG 180

Query: 174 RVGRKVADFFLDFLQADIGLDTKQQNQVLMQAVEDFCADAKFEKEEVISYKKQVYEYCND 233
           R GRKVADFFLDF+    G++TK QN+ LM AVEDF A ++  K+E    +++V+EYC +
Sbjct: 181 RAGRKVADFFLDFMGCVEGVNTKAQNKSLMNAVEDFVASSELTKDERQQCREKVFEYCTE 240

Query: 234 QIKAGDEVRVQELSGELPPSNEGVNFFDFTREQGYQLEESFPADRSTVRKLTKYVGAGGG 293
           ++ +G ++++++L+ EL  +    +F+DF +   Y+LEE FP D+ T+R+L K+ G GGG
Sbjct: 241 RVDSGADIQLKDLADELADAGMD-SFYDFAQGGDYELEEEFPGDKPTLRQLKKFSGTGGG 299

Query: 294 LNLSFDSLLLGERVFYDPETDTLTIKGTPPNLRDQLTR 331
           + +SFD   LGERV YDP +D++ IKG P NL+DQL R
Sbjct: 300 VTISFDGQHLGERVIYDPISDSILIKGVPANLKDQLDR 337