Pairwise Alignments

Query, 333 a.a., nucleoid-associated protein from Vibrio cholerae E7946 ATCC 55056

Subject, 342 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  293 bits (750), Expect = 4e-84
 Identities = 145/339 (42%), Positives = 229/339 (67%), Gaps = 10/339 (2%)

Query: 1   MSLFLSNVILHQLRKNDNDELVVNYRAESLRNDTSTENLVAELHRVFNAKAGKGFGCF-- 58
           MS+ +   I+H++ ++   +L    R + L N  + E ++ ELH+ + +K+GKGFG F  
Sbjct: 1   MSINIEQAIIHEISQDSQGQLRCRLRPQPLLNGQAVEMMLEELHQTYTSKSGKGFGYFGI 60

Query: 59  -----KSDSEFQLWLQEMRRGTLPFYEFSQQSAQRLKNELAKYPFADEGILVMAEYQSLA 113
                +++  F   L+E R G L F EF+ Q+++ L+ ELAKY F+  G L+M+ Y S+A
Sbjct: 61  HGDDGEANPAFANALKEYRAGDLGFVEFTGQASKLLQEELAKYDFSQGGFLLMSCYTSMA 120

Query: 114 TDYLFIGLLPLNQSLKVTEGLDISATDYLDINKMDIVARIDLSSYETDKESKRYLSYIKG 173
           +DYLF+ LL    S+ V + +++S  ++LD+N + + ARIDL+  + DK+S++Y+S+I+G
Sbjct: 121 SDYLFVALLSAKSSMTVLDDMELSQNNHLDLNNIQLAARIDLTELQADKDSRKYISFIRG 180

Query: 174 RVGRKVADFFLDFLQADIGLDTKQQNQVLMQAVEDFCADAKFEKEEVISYKKQVYEYCND 233
           R GRKVADFFLDF+    G++TK QN+ LM AVEDF A +   KEE    + +V+EYC++
Sbjct: 181 RAGRKVADFFLDFMGCVEGVNTKAQNKTLMNAVEDFVASSDLTKEERQQCRNKVFEYCSE 240

Query: 234 QIKAGDEVRVQELSGELPPSNEGV-NFFDFTREQGYQLEESFPADRSTVRKLTKYVGAGG 292
           +   G ++ +++L+ EL  +++G+ +F+DF R   Y+L+E FPAD+ST+R+L K+ G GG
Sbjct: 241 RFDEGADIEIKDLADEL--ADQGMESFYDFARGGSYELDEEFPADKSTLRQLKKFSGTGG 298

Query: 293 GLNLSFDSLLLGERVFYDPETDTLTIKGTPPNLRDQLTR 331
           G+ +SFD   LG+RV YDP +DT+ IKG P NL+DQL R
Sbjct: 299 GVTISFDGGHLGQRVIYDPISDTILIKGVPANLKDQLDR 337