Pairwise Alignments

Query, 481 a.a., Na+/H+ antiporter NhaC from Vibrio cholerae E7946 ATCC 55056

Subject, 445 a.a., Na+/H+ antiporter family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 94.4 bits (233), Expect = 7e-24
 Identities = 89/385 (23%), Positives = 156/385 (40%), Gaps = 35/385 (9%)

Query: 68  GISNGLGAVLILLAVGALVGTWISGGIVPTIIYYGLKAIHPSIFLLATMVICSLTALATG 127
           G SN +   LI L  G       + G V   +  GL  I  ++ L    VI +  A A G
Sbjct: 81  GHSNIIAMCLIYLLAGGFAAVAKATGGVDATVALGLSLIPSNLLLPGFFVIAAFIATAMG 140

Query: 128 TSWGAAGTAGIAMMGIGQGLGIPAPITAGAVLSGCYFGDKMSPLSDSVILASSMSNVEVM 187
           TS G         +G+     I   + AGAV+SG  FGD +S +SD+ I A+     ++ 
Sbjct: 141 TSMGTIAAVAPIALGVADQAQIDYALMAGAVMSGALFGDNLSIISDTTIAATRTQGCDMK 200

Query: 188 EHIKGMLPIALISYVITGILFTLFGFHYAGNVDMSQVETVIAAMEQQFY-ITPYSFVPVL 246
           +  +  L  A+ + ++T + F + G          Q +  +AA E  F  + PY  + VL
Sbjct: 201 DKFRENLIFAIPASLLTFVAFVIAG----------QGQAELAAQEVDFIKVIPYLTILVL 250

Query: 247 IVLGLLAMRMPSFPVISFGSLLGIVWAVMIQDVDFLQAFNTAWAPYNIESGVSFIDAILN 306
            V GL       F V++ G LL      +  D   +Q     +A ++    +  +  ++ 
Sbjct: 251 AVAGLNV-----FVVLTLGILLAGATGFITMDYGVIQFGKDIYAGFSNMQEIFILSMLV- 304

Query: 307 RGGMSSMLGSVAVIVFGLGFGGLLDRVGVLETIAKLFER--RVTSPGSLATSTIGTAFMG 364
            GG+++++     + F            V + I KL  R  +     S   + +G A + 
Sbjct: 305 -GGLAALMQQQGGLAF------------VSKQIEKLIARFSKAQGEASCRAAELGMAGIV 351

Query: 365 NVFGSAM---YVSLILTPKICAKNYDRLGYQRKNLSRNAEFGGTLTSGMVPWSDNGIYMA 421
            V  S +    VS+++T  I     ++ G   K  +   +    +  G++P+    + +A
Sbjct: 352 AVTNSCVANNTVSIVVTGDIAKDLAEKHGVTPKRAASVLDIFACIIQGLIPYGAQALLIA 411

Query: 422 SILGVATLSYAPFMWLSFVCILVTI 446
           S   +  L+     W   +   V I
Sbjct: 412 STFSITPLAAVSHAWYCMILAAVAI 436