Pairwise Alignments

Query, 481 a.a., Na+/H+ antiporter NhaC from Vibrio cholerae E7946 ATCC 55056

Subject, 526 a.a., hypothetical Na+/H+ antiporter (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 59.7 bits (143), Expect = 2e-13
 Identities = 53/179 (29%), Positives = 84/179 (46%), Gaps = 15/179 (8%)

Query: 46  VIMTLGIRLGHKYKDLENAALNGISNGLGAVLILL---AVGALVGTWISGGIVPTIIYYG 102
           V + L +RL    K+   AA  G+   L A+ ILL   A+GA+V    +G  + ++    
Sbjct: 323 VSIALALRLKLGAKNWIKAAPQGVMAMLPAINILLFAWAIGAVVRDVETGKYLASLANGN 382

Query: 103 LKAIHPSIFLLATMVICSLTALATGTSWGAAGTAGIAM-----MGIGQGLGIPAPITAGA 157
           L      +      V+    A ATGTSWG   T GI +     M     + +  P+ A A
Sbjct: 383 LPI---EVLPAVVFVLSCAMAFATGTSWG---TFGIMLPLAGDMAAASDISLMLPMLA-A 435

Query: 158 VLSGCYFGDKMSPLSDSVILASSMSNVEVMEHIKGMLPIALISYVITGILFTLFGFHYA 216
           VL+G  FGD  SP+S + IL+++ +    ++H+   LP AL       + +   GF ++
Sbjct: 436 VLAGSVFGDHSSPISSTSILSATGAGCHHIDHVMTQLPYALAMAFGAALGYLAMGFMHS 494