Pairwise Alignments

Query, 481 a.a., Na+/H+ antiporter NhaC from Vibrio cholerae E7946 ATCC 55056

Subject, 507 a.a., hypothetical Na+/H+ antiporter (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 68.2 bits (165), Expect = 6e-16
 Identities = 58/230 (25%), Positives = 100/230 (43%), Gaps = 30/230 (13%)

Query: 8   LPSLTQVIVSLGLFL-----------LLAFSFTAKLDLPIQLALYIGWFVIMTLGIRLGH 56
           +P LT +  S+GL L           + A+  +A +   ++ A  +   V + L I  G 
Sbjct: 253 IPMLTLLCASVGLTLWSGAQQVPAWDISAWLASADIGAAMRDACLLSTLVTLGLLIMSGR 312

Query: 57  KYKDLENAALNGISNGLGAVLILLAVGALVGTWISGGIVPTIIYYGLKA------IHPSI 110
               L     +G+       +I  A+  L+ TW+ G ++  +    L A      + PS+
Sbjct: 313 SIGKLLGDLAHGVR------MIAFAIAILLCTWMIGAVIQDLGVASLLADWAKWYLSPSL 366

Query: 111 FLLATMVICSLTALATGTSWGAAGT----AGIAMMGIGQGLGIPAPITAGAVLSGCYFGD 166
            +    ++C++ A ATG+SWG         G     +   L +P      AV++G  FGD
Sbjct: 367 LVAGMFLLCAIMAFATGSSWGTFAIMIPIGGEIAHNMDASLLLPV---LSAVMAGSVFGD 423

Query: 167 KMSPLSDSVILASSMSNVEVMEHIKGMLPIALISYVITGILFTLFGFHYA 216
             SP+SD+ +L+++ S     +H+   LP ALI+     + F L     A
Sbjct: 424 HCSPISDTSVLSATSSGCLPHDHVVTQLPFALIAAFAALVGFQLVNLSVA 473



 Score = 24.6 bits (52), Expect = 0.008
 Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 5/105 (4%)

Query: 329 LLDRVGVLETIAKLFERRVTSPGSLATSTIGTAFMGNVFGSAMYVSLILTPKICAKNYDR 388
           LL R G +        RR+ +      + +G   +G +       S +    +C     R
Sbjct: 85  LLARSGAVGLFGDWLYRRIRTGRQ---ARVGVVLLGWLVFIDGIFSCLAVGHVCQPLSQR 141

Query: 389 LGYQRKNLSRNAEFGGTLTSGMVPWSDNGIYMASILGVATLSYAP 433
            G +++ L+   +   +    ++P+S  G Y+ ++L  A LS+ P
Sbjct: 142 YGIRQEQLAYLVDSNASPLCSLLPFSSWGPYVMALL--AGLSFLP 184