Pairwise Alignments

Query, 481 a.a., Na+/H+ antiporter NhaC from Vibrio cholerae E7946 ATCC 55056

Subject, 475 a.a., Na(+)/H(+) antiporter (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  249 bits (637), Expect = 1e-70
 Identities = 153/475 (32%), Positives = 263/475 (55%), Gaps = 20/475 (4%)

Query: 1   MLQAQQRLPSLTQVIVS-LGLFLLLAFSFTAKLDLPIQLALYIGWFVIMTLGIRLGH-KY 58
           M +A   L SL  ++V  + LF  +    +  L+   Q++L     + + +G+      +
Sbjct: 1   MKKAPSPLVSLLPIVVLVILLFATIRVFGSDALNGGSQVSLLTTTAICILIGMAFYKIPW 60

Query: 59  KDLENAALNGISNGLGAVLILLAVGALVGTWISGGIVPTIIYYGLKAIHPSIFLLATMVI 118
           KD E A  N ++    A++ILL +GAL G W+  G+VPT+IYYG++ IHPS FL +T +I
Sbjct: 61  KDYELAITNNVAGVTTAIIILLIIGALSGIWMISGVVPTLIYYGMQIIHPSFFLTSTCII 120

Query: 119 CSLTALATGTSWGAAGTAGIAMMGIGQGLGIPAPITAGAVLSGCYFGDKMSPLSDSVILA 178
           C L ++ TG+SW    T GIA+MGIG+  G      AGA++SG YFGDK+SPLS++ ILA
Sbjct: 121 CVLISVMTGSSWTTIATIGIALMGIGKAQGFEEGWIAGAIISGAYFGDKVSPLSETTILA 180

Query: 179 SSMSNVEVMEHIKGMLPIALISYVITGILFTLFGF-HYAGNVDMSQVETVIAAMEQQFYI 237
           +S+++  +  HI+ M+   + S +IT I+FT+ G  H A N     +  V AA+ ++F+I
Sbjct: 181 ASVTDTPLFRHIRYMMITTVPSLIITLIIFTVAGLSHDASNT--QHIAEVAAALNEKFHI 238

Query: 238 TPYSFVPVLIVLGLLAMRMPSFPVISFGSLLGIVWAVMIQ---------------DVDFL 282
           TP+  +  +    L+A ++PS   +   +LL  ++A++ Q               D  F 
Sbjct: 239 TPWLLIIPIATGILIARKVPSIITLFLSTLLAGIFALIFQPDLLREISGAAVSNFDSLFK 298

Query: 283 QAFNTAWAPYNIESGVSFIDAILNRGGMSSMLGSVAVIVFGLGFGGLLDRVGVLETIAKL 342
               T +   ++++  + +  ++   GMS M+ ++ +I+  + FGG +   G+L +I  L
Sbjct: 299 GLMMTIYGKTSLQTDNAVLTDLIATRGMSGMMNTIWLILCAMCFGGAMTASGMLGSITSL 358

Query: 343 FERRVTSPGSLATSTIGTAFMGNVFGSAMYVSLILTPKICAKNYDRLGYQRKNLSRNAEF 402
           F R +    S+ ++T+ +    N+  +  Y+S+ILT  +    Y + GY+   LSR  E 
Sbjct: 359 FVRFMKKTVSVVSATVCSGLFLNLATADQYISIILTGNMFRDIYAKKGYESCLLSRTTED 418

Query: 403 GGTLTSGMVPWSDNGIYMASILGVATLSYAPFMWLSFVCILVTIITSYCGWFVDK 457
             T+TS ++PW+  G+  A+IL V TL Y P+ + + +  L++I  +  G+ + K
Sbjct: 419 SVTVTSVLIPWNTCGMTQATILSVPTLVYLPYCFFNIISPLMSIAVAAIGYKIVK 473