Pairwise Alignments

Query, 481 a.a., Na+/H+ antiporter NhaC from Vibrio cholerae E7946 ATCC 55056

Subject, 501 a.a., Na+/H+ antiporter NhaC (RefSeq) from Shewanella sp. ANA-3

 Score = 65.1 bits (157), Expect = 5e-15
 Identities = 41/138 (29%), Positives = 71/138 (51%), Gaps = 17/138 (12%)

Query: 74  GAVLILLAVGALVGTWISGGIVPTIIYYGLKA------IHPSIFLLATMVICSLTALATG 127
           G  +I  A+  L+ TW+ G ++  +    L A      + PS+ +    ++C++ A ATG
Sbjct: 318 GVRMIAFAIAILLCTWMIGAVIQDLGVASLLASWAKLYLSPSLLVAGMFLLCAIMAFATG 377

Query: 128 TSWGAAGTAGIAMMGIGQGLG------IPAPITAGAVLSGCYFGDKMSPLSDSVILASSM 181
           +SWG        M+ IG  +       +  P+ + AV++G  FGD  SP+SD+ +L+++ 
Sbjct: 378 SSWGTFAI----MLPIGGEIAHNMDASLLLPVLS-AVMAGSVFGDHCSPISDTSVLSATS 432

Query: 182 SNVEVMEHIKGMLPIALI 199
           S     +H+   LP ALI
Sbjct: 433 SGCLPHDHVVTQLPFALI 450



 Score = 28.1 bits (61), Expect = 7e-04
 Identities = 43/194 (22%), Positives = 80/194 (41%), Gaps = 17/194 (8%)

Query: 241 SFVPVLIVLGLLAMRMPSFPVISFGSLLGIVWAVMIQDVDFLQAFNTAWAPYNIESGVS- 299
           + +P+L+ L L      +   +  G L G   A++I   D LQ+       Y +E G   
Sbjct: 7   AILPLLLTLVLALWLRRTLVALGVGILSG---ALIIAQFDILQSLG-----YLLEIGAKQ 58

Query: 300 FIDAILNRGGMSSMLGSVAVIVFGLGFGGLLDRVGVLETIAKLFERRVTSPGSLATSTIG 359
           F      +    ++L  +A+++ G     LL R G +E       RR+ +      + IG
Sbjct: 59  FYSQDAWQWWHLNVL--MAMLLLG-SMTQLLARSGAVEQFGDWLYRRIRTGRQ---ARIG 112

Query: 360 TAFMGNVFGSAMYVSLILTPKICAKNYDRLGYQRKNLSRNAEFGGTLTSGMVPWSDNGIY 419
              +G +       S +    +C     R G ++  L+   +   +    ++P+S  G Y
Sbjct: 113 VVLLGWLVFIDGIFSCLAVGHVCQPLSQRYGIRQTQLAYLVDSNASPLCSLLPFSSWGPY 172

Query: 420 MASILGVATLSYAP 433
           + ++L  A LS+ P
Sbjct: 173 VMALL--AGLSFLP 184