Pairwise Alignments
Query, 1052 a.a., ribonuclease E from Vibrio cholerae E7946 ATCC 55056
Subject, 1060 a.a., ribonuclease, Rne/Rng family from Pseudomonas stutzeri RCH2
Score = 801 bits (2068), Expect = 0.0
Identities = 502/1097 (45%), Positives = 648/1097 (59%), Gaps = 85/1097 (7%)
Query: 1 MKRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDY 60
MKRMLINATQ EELRVALVDGQRLFDLDIES E KKANIYKG+ITR+EPSLEAAFVD+
Sbjct: 1 MKRMLINATQPEELRVALVDGQRLFDLDIESGAREQKKANIYKGKITRVEPSLEAAFVDF 60
Query: 61 GAERHGFLPLKEIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFI 120
GAERHGFLPLKEI+REYF S +GR NIKDVL EGQEVIVQ+EKEERG+KGAALTTFI
Sbjct: 61 GAERHGFLPLKEISREYFSK--SPEGRVNIKDVLREGQEVIVQVEKEERGNKGAALTTFI 118
Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLELPQGMGLIVRTAGVGKSAEEL 180
SLAG YLVLMPNNPRAGGISRRIEG+ER EL+ AL+ L++P MGLIVRTAG+G+S+EEL
Sbjct: 119 SLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLDIPADMGLIVRTAGLGRSSEEL 178
Query: 181 EWDLNVLLKHWSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERA 240
+ DL+ LL+ W+A+K AS APFLI+QESNVI+RAIRDYLR+DIGE+LIDS + A
Sbjct: 179 QCDLDYLLQLWTAVKDASKDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEA 238
Query: 241 LEHIRLVRPDFVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTS 300
L I+ V P + +++K YE VPLF+ FQIESQIE+AFQREV+LPSGGSIVIDPTEAL S
Sbjct: 239 LSFIQQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVS 298
Query: 301 IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN 360
IDINSARATKGGDIEETAL TNLEAA+EIARQLRLRD+GGL+VIDFIDMTP ++QR VE
Sbjct: 299 IDINSARATKGGDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEE 358
Query: 361 RLREAVRVDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLAL 420
++REA+ DRAR+Q+GRISRFGLLEMSRQRL PSL E S +CPRC G G+IRD ESL+L
Sbjct: 359 KMREALEADRARIQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSL 418
Query: 421 SVLRLIEEEALKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETP 480
++LRLIEEEALKD T++V A VP +A++LLNEKR +I IE + RI I+P+ +ETP
Sbjct: 419 AILRLIEEEALKDRTAEVRARVPFQVAAFLLNEKRNAITKIELRTRARIFILPDDHLETP 478
Query: 481 HFEVIRVREGEEQDVLSYLIPKKLEAMKEAEGKEVVDVELKPKRI-EEPVLKGFAAPAEA 539
HFEV R+R+ D L + M + E +E V + +E +K AP
Sbjct: 479 HFEVQRLRD----DSPEILAGQASYEMSQTEAEEAQPVSSTRTLVRQEAAVK--TAPQRT 532
Query: 540 VPAPTPKPKAEPQPVAEVQQPAQPGFFSRVFKAIASLFSATPEAAKVEAPVTQNSEQDKP 599
PAP P A Q +P F + K++ LF+ EA + +A + P
Sbjct: 533 APAPAAAAAPAEAPAAAPAQ--EPSLFKGLIKSLVGLFAG--EAKEPQAAAEVEKKPASP 588
Query: 600 RRERNDRNNDRRRNPRDKNRRRGNEENNERNDKETSNSNRKPQE-------RKPKQERGE 652
R +RND R+ R ++ R G +E + ++ R+P+E R+P++ER
Sbjct: 589 RPQRNDERRSGRQQNRRRDSRGGRDEERKPREERQPREERQPREERQPRDDRQPREERQP 648
Query: 653 RNERNDRNERPETERPERQDRRNKRDESKTAKLLEQGRQLAAEAQQ-EVKAVEPKEEKAA 711
R R +R R + E E Q RR + + E+ R+L A + V A E ++ +
Sbjct: 649 RPPREERKPREQVEATEAQPRRERAPREERKPREERKRELRAPIDEAPVTAAEEEQVERQ 708
Query: 712 VVKERRQRRKLSKQIRVKDQLAAEELDNLSTAPVDNAFDAPAPVNLPVTDDF--ADSAQE 769
R +R+ ++Q V AA+EL L T+D A+ AQ+
Sbjct: 709 PRAPREERKPRAEQQAV---AAADEL-------------------LQQTEDANEAEDAQD 746
Query: 770 DNEQDDQKQ-RRNRRSPRHLRASGQRRRRGRDRRPN----------PFRLRKGGVASPEM 818
NE + R RR R R RR R RD N P + + VA+
Sbjct: 747 TNEASEGNDGERPRRRSRGQRRRSNRRERQRDANGNEIDEVDESNAPVKTEEIAVAATAA 806
Query: 819 AMGKVMPRYDLAPRPQSRHETA--EGAQHVTHVTPTAATAVVESEKVAA--PRVLGG--- 871
A+ + AP+ + + + V + AA A V E+ AA P V+
Sbjct: 807 ALAANTTDTEAAPQVKLADDAVIQTSTEGVATIVEQAAVAEVTDERTAAEEPAVVEAAVE 866
Query: 872 -------VAFPEMAMGKVIVRRETAAVQP--EPVVQE----PVITDVIAETLIAPVEPVV 918
VA E+A +V + QP EPVV++ P + + AP +P
Sbjct: 867 APVQPTEVAAGEVAPSEVPAVQTDVTPQPASEPVVEKTEAAPAAAPALTPSGRAPNDPRE 926
Query: 919 VEATVIEAPVIEESATETAALETVVAKVAEVEEPATISDEVVAQTTVEVIADKM---AEP 975
V EA E A E A E A + P ++ E +T E IA + A+P
Sbjct: 927 VRRRQREA---ERLAKEAAEAEAKAAAAQPLASPEIVASEPAEETQTEAIAQPVASDAQP 983
Query: 976 IKVVKPVTVSATSLTAKAVIQQPYASSPMTKAPGSDDIREV--QVNAAPLRAERYQARGA 1033
+VV+ + + + + + + P ++ + EV + AP+ E Q
Sbjct: 984 EQVVESAPAAEQLASEEPSVSPTVEPTQQAQTPVTEPVAEVVEEKPEAPVSEEAPQT-AP 1042
Query: 1034 GSQVARNQASAGMSKPQ 1050
+ A KPQ
Sbjct: 1043 EEKAAEGDEPDNREKPQ 1059