Pairwise Alignments

Query, 1052 a.a., ribonuclease E from Vibrio cholerae E7946 ATCC 55056

Subject, 1057 a.a., ribonuclease E from Azospirillum brasilense Sp245

 Score =  397 bits (1019), Expect = e-114
 Identities = 302/880 (34%), Positives = 447/880 (50%), Gaps = 54/880 (6%)

Query: 90   IKDVLNEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGD-ER 148
            I++V+   Q ++VQ+ KEERG+KGAALTT++SL G Y VLMPN  R GGISR+I    +R
Sbjct: 201  IQEVIKRRQVMLVQVTKEERGNKGAALTTYLSLPGRYCVLMPNTGRGGGISRKITNPADR 260

Query: 149  TELKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDSNPAPFLIH 208
              LK  LS L++P+GM +I+RTAG+ +S +E++ DL  LL+ W  I+  +  + AP LI+
Sbjct: 261  KRLKEILSDLDIPEGMAVILRTAGLERSKQEIKRDLEYLLRLWDDIRVQTLKSSAPCLIY 320

Query: 209  QESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGE-VPLFSH 267
            +E+N+I R+IRD    DI EI ++ ++ +  A + +R++ P    RV +Y+ + +PLF  
Sbjct: 321  EEANLIKRSIRDLYTDDIDEIWVEGSAGFNTARDFMRMMMPSHSKRVMQYQDDTIPLFHR 380

Query: 268  FQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATKGGDIEETALNTNLEAAD 327
            +Q+E+QI++     V+L SGG IVI+PTEAL SID+NS ++T+  +IEETA  TNLEAAD
Sbjct: 381  YQVETQIDAIHSPVVQLRSGGYIVINPTEALVSIDVNSGKSTRERNIEETAYKTNLEAAD 440

Query: 328  EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 387
            E+ARQLRLRDL GL+VIDFIDM   R+   VE RL+EA++ DRAR+Q+GRIS FGLLE+S
Sbjct: 441  EVARQLRLRDLAGLIVIDFIDMEEPRNNAAVERRLKEAMKNDRARIQLGRISAFGLLELS 500

Query: 388  RQRLSPSLAEASHHICPRCKGTGVIRDNESLALSVLRLIEEEALKDNTSQVLAVVPVSIA 447
            RQRL PSL E +   CP C GTGVIR  ES +L VLR IEEE ++  +S++   VP  IA
Sbjct: 501  RQRLRPSLLETNFERCPHCSGTGVIRSVESASLHVLRAIEEEGIRKRSSEITVFVPTRIA 560

Query: 448  SYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVREGEEQDVLSYLIPKKLEAM 507
             Y+LN+KR  +  IE   + R+ +  +  +  P   + RV+    +D +  +  +++   
Sbjct: 561  LYILNQKRGELTKIEDRYRFRVMVQADDTLIAPDLRLERVKARTPEDDVPLVSAERV--- 617

Query: 508  KEAEGKEVVDVELKPKRIEEPVLKGF-AAPAEAVPAPTPKPKAEPQPVAEVQQPAQPGFF 566
              AE   ++  E +    E PV++    A AE         ++E       ++    G  
Sbjct: 618  -LAETDRILAAEAEEAEEEAPVVEAAEVAGAEVTERADAAGESEGDRRRRRRRRRGRG-- 674

Query: 567  SRVFKAIASLFSATPEAAKVEAPVTQNSEQDKPRRERNDRNNDRRRNPRDK---NRRRGN 623
             R  +   + F  + EA+       + +E D+   E  D + D      D+    R + +
Sbjct: 675  -RDREDGRAPFGESAEAS------DEATEGDEIEAEAADADTDADETAVDEEAIERAQID 727

Query: 624  EENNERNDKETSNSNRKPQERK----PKQERGERNERNDRNERPETERPE-RQDRRNKRD 678
                  ND +   ++ +  E +       E  +  +  + N     ER + R+ +R  R 
Sbjct: 728  APEFVINDVDVGPAHIEDDEDEDADLAASEADDGTDAFETNGDANGERKKRRRGKRGGRR 787

Query: 679  ESKTAKLLEQGRQL-AAEAQQEVKAVEPKEEKAAVVKERRQRRKLSKQIRVKDQLAAEEL 737
             S+  + LE G  L AAE++  V+     E     V+  R          +   +   E 
Sbjct: 788  RSRQREGLEAGEGLPAAESEDGVEGEAEAESFPTAVEAGR----AVNPPELPADMEPVEF 843

Query: 738  DNLSTAPV--DNAFDAPAPVNLPVTDDFADSAQEDNEQDDQKQRRNRRSPRHLRASGQRR 795
            D + T+ V  DNA DA AP          ++A    E   +K RR R       A+    
Sbjct: 844  DWVLTSAVAEDNAADA-APDTAAEGPTAEEAAPVAEEAPARKPRRGRAKATAAEAAESVT 902

Query: 796  RRGRDRRPNPFRLRKGGVASPEMAMGKVMPRYDLAPRPQSRHETAEGAQHVTHVTPTAAT 855
                     P R  KG     +          + AP P     + +           A T
Sbjct: 903  AEPEAAPAKPKRAAKGAAKGGKATAKAAAAPEETAPPPAKPSRSRK-----------AKT 951

Query: 856  AVVESEKVAAPRVLGGVAFPEMAMGKVIVRRETAAVQPEPVVQEPV-ITDVIAETLIAPV 914
            A VE+    AP V   VA  E    +   +R+TAA  P      P  +   +AE   A  
Sbjct: 952  AAVEAAPAPAP-VAAPVA--EEPKKRPARKRKTAADAPAEAAPAPAPVAAPVAEE--AKK 1006

Query: 915  EPVVVEATVIEAPVIEESATETAALETVVAKVAEVEEPAT 954
             P     T  +AP   E+A   A  E   A VA   EPA+
Sbjct: 1007 RPARKRKTAADAPA--EAAPAPAVSE---APVAPANEPAS 1041



 Score = 90.9 bits (224), Expect = 4e-22
 Identities = 43/77 (55%), Positives = 55/77 (71%)

Query: 2  KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61
          KRML++AT  EE RVA+V+G RL DLD E    +  K NIY  ++TR+EPSL+AAFV+YG
Sbjct: 3  KRMLVDATHPEETRVAVVNGNRLEDLDFEIATRKQLKGNIYLAKVTRVEPSLQAAFVEYG 62

Query: 62 AERHGFLPLKEIAREYF 78
            RHGFL   EI  +Y+
Sbjct: 63 GNRHGFLAFSEIHPDYY 79