Pairwise Alignments

Query, 1052 a.a., ribonuclease E from Vibrio cholerae E7946 ATCC 55056

Subject, 889 a.a., Ribonuclease E and G (NCBI) from Rhodospirillum rubrum S1H

 Score =  435 bits (1119), Expect = e-126
 Identities = 292/839 (34%), Positives = 430/839 (51%), Gaps = 109/839 (12%)

Query: 2   KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61
           KRMLI+A   EE RV ++DG RL + D+E+   +  K NIY  ++ R+EPSL+AAFV+YG
Sbjct: 3   KRMLIDANHPEETRVVVLDGTRLDEFDVETSTKKQLKGNIYLAKVVRVEPSLQAAFVEYG 62

Query: 62  AERHGFLPLKEIAREYF------------------------------------------- 78
             RHGFL   EI  +Y+                                           
Sbjct: 63  GNRHGFLAFNEIHPDYYQIPVADREKLIAEEALEAAADDDDEADSVETLGGDEAEDSAPA 122

Query: 79  PDGYSYQGRP-NIKDVLNEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAG 137
           P   S   R   I++V+   Q ++VQ+ KEERG+KGAALTT++SLAG Y V MPN  R G
Sbjct: 123 PRAKSRVSRSYKIQEVIKRRQIMLVQVVKEERGNKGAALTTYLSLAGRYCVFMPNTTRGG 182

Query: 138 GISRRI-EGDERTELKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQ 196
           G+SR+I    +R  LKS +  L  P+G  +I+RTAG  +S  E+  D + LL+ W +I+Q
Sbjct: 183 GVSRKITSATDRKRLKSIMGELIGPKGSAVILRTAGSERSRAEIRRDHDYLLRTWDSIRQ 242

Query: 197 ASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVK 256
            + ++ AP LIH+E ++I RAIRD   RDI EIL++ ++ Y  A + ++++ P    +V+
Sbjct: 243 TTLASRAPCLIHEEGSLIKRAIRDIYSRDIEEILVEGDAGYRTAKDFMKMLTPSHAKKVQ 302

Query: 257 KYEGEV-PLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATKGGDIE 315
            Y+ E+ PLF  +Q+ESQ+++      +L SGG +VI+ TEAL +ID+NS R+T+  +IE
Sbjct: 303 PYKDEIMPLFHRYQVESQMDAMHSPIAQLRSGGYLVINQTEALVAIDVNSGRSTRERNIE 362

Query: 316 ETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQI 375
           ETA  TNLEAADEIARQLRLRDL GL+VIDFIDM   R    VE R+++A+R DRAR+Q+
Sbjct: 363 ETAYKTNLEAADEIARQLRLRDLSGLIVIDFIDMDDPRSNANVERRVKDALRNDRARIQL 422

Query: 376 GRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLALSVLRLIEEEALKDNT 435
           GRIS FGLLEMSRQRL PSL E S   CP C G+G +R  ES A+ +LR+IEEE ++  +
Sbjct: 423 GRISHFGLLEMSRQRLRPSLMETSFQPCPHCHGSGSLRSVESTAIHILRIIEEEGVRRRS 482

Query: 436 SQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVREGEEQDV 495
           S+V   VP +IA Y+LN KR  +  IE     ++ ++ +  +  P + + RV+       
Sbjct: 483 SEVTVTVPTAIALYILNNKRTVLAAIEARYDFQVFLLGDDTLIVPDYRMDRVK------- 535

Query: 496 LSYLIPKKLEAMKEAEGKEVVDVELKPKRIEEPVLKGFAAPAEAVPAP-------TPKPK 548
                        E EG + +     P            AP  A+PAP         +  
Sbjct: 536 ------------AEREGLDALPAAAPPP----------TAPVAALPAPEVLEDEDEDEGT 573

Query: 549 AEPQPVAEV--QQPAQPGFFSRVFKAIASLFSATPEAAKVEAPVTQNSEQDKPRRERNDR 606
            E +  AE   Q  A      R  +          +  ++E   + + E+  P     D 
Sbjct: 574 VEDEAFAEENGQNGADADGQGRKRRRRRRRRRKDQDGVEIEGS-SVDDEEGAPEGTA-DS 631

Query: 607 NNDRRRNPRDKNRRRGNEENNERNDKETSNSNRKPQERKPKQERGERNERNDR-NERPET 665
             D   +   +      +  +E +  + S S+R  Q R+ ++ RG R  R+D  N  PE 
Sbjct: 632 TEDEGADDEGETGDEAEDTGDELDPADGSLSDRDGQSRRRRRRRGRRGRRDDTGNGLPEP 691

Query: 666 ERP-ERQDRRNKRDESKTAKLLEQGRQLAAE--AQQEVKAVEPKEEKAAVVKE------- 715
             P    D     D+S  +  ++       E  +  +  +    E+ AA + +       
Sbjct: 692 AVPASTADTLPLDDDSIESAEIDDDPTAEDEIISSTDADSAPAGEDSAAAITDELGREGR 751

Query: 716 ----RRQRRKLSKQIRVKDQLAAEELD--------NLSTAPVDNAFDAPAPVNLPVTDD 762
               RR+ R+  + +     +A +  D            A  D+A DA AP   P+ D+
Sbjct: 752 RPPRRRRPRRKDRGVETNRAIALDASDAEAGPATAETDLAAFDDAPDAEAPFAEPLGDE 810



 Score = 27.3 bits (59), Expect = 0.005
 Identities = 85/372 (22%), Positives = 131/372 (35%), Gaps = 70/372 (18%)

Query: 663  PETERPERQDRRNKRDESKTAKLLEQGRQLAAEAQQEVKAVEPKEEKAAVVKERRQRRKL 722
            PE    E +D     DE+      E+  Q  A+A  + +            + RR+RR+ 
Sbjct: 561  PEVLEDEDEDEGTVEDEA----FAEENGQNGADADGQGRKR----------RRRRRRRR- 605

Query: 723  SKQIRVKDQLAAEELDNLSTAPVDNAFDAPAPVNLPVTDDFADSAQEDNEQ-----DDQK 777
                  KDQ   E    +  + VD+   AP        D+ AD   E  ++     D+  
Sbjct: 606  ------KDQDGVE----IEGSSVDDEEGAPEGTADSTEDEGADDEGETGDEAEDTGDELD 655

Query: 778  QRRNRRSPRHLRASGQRRRRGRDRRPNPFRLRKGGVASPEMAMGKVMPRYDLAPRPQSRH 837
                  S R  ++  +RRRRGR  R +       G   PE A+       D  P      
Sbjct: 656  PADGSLSDRDGQSRRRRRRRGRRGRRD-----DTGNGLPEPAV--PASTADTLPLDDDSI 708

Query: 838  ETAEGAQHVTHVTPTAATAVVES-EKVAAPRVLGGVAFPEMAMGKV--------IVRRET 888
            E+AE         PTA   ++ S +  +AP      A     +G+           RR+ 
Sbjct: 709  ESAE-----IDDDPTAEDEIISSTDADSAPAGEDSAAAITDELGREGRRPPRRRRPRRKD 763

Query: 889  AAVQPEPVV----QEPVITDVIAETLIAPVEPVVVEATVIEAPVIEESATETAALETVVA 944
              V+    +     +       AET +A  +    +A   EAP  E    E   L+   A
Sbjct: 764  RGVETNRAIALDASDAEAGPATAETDLAAFD----DAPDAEAPFAEPLGDE-RLLDETPA 818

Query: 945  KVAEVEEPATISDEVVAQTTVEVIADKMAEPIKVVKPVTVSATSLTAKAVIQQPYASSPM 1004
            ++AE E     ++   A+T ++        P   V P  V+       A      A++P 
Sbjct: 819  EIAEAE-----AEVETAETDIDRDPADGEPPTAPVAPPPVAVVKTPDPAA-----AAAPP 868

Query: 1005 TKAPGSDDIREV 1016
               P SD  R V
Sbjct: 869  AAVPSSDQPRRV 880