Pairwise Alignments

Query, 1052 a.a., ribonuclease E from Vibrio cholerae E7946 ATCC 55056

Subject, 978 a.a., ribonuclease E from Phaeobacter inhibens DSM 17395

 Score =  385 bits (989), Expect = e-111
 Identities = 246/696 (35%), Positives = 368/696 (52%), Gaps = 58/696 (8%)

Query: 87  RPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRI-EG 145
           R  I++V+   Q ++VQ+ KEERG+KGAALTT++SLAG Y VLMPN  R GGISR+I   
Sbjct: 276 RYKIQEVIKVRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNA 335

Query: 146 DERTELKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDSNPAPF 205
            +R +LK     L++P G GLIVRTAG  ++  E++ D   L + W  I++ +  + AP 
Sbjct: 336 ADRKKLKDIAVELDVPTGAGLIVRTAGAKRTKSEIKRDYEYLQRLWEQIRELTLKSIAPA 395

Query: 206 LIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLF 265
            I++E ++I R+IRD   R+I E+L++    Y  A + ++++ P     VK Y+ ++PLF
Sbjct: 396 KIYEEGDLIKRSIRDLYSREIDEVLVEGERGYRIAKDFMKMIMPSHAKNVKNYQDQLPLF 455

Query: 266 SHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATKGGDIEETALNTNLEA 325
           + FQ+ES + + F   V+L SGG IVI  TEAL +ID+NS RATK G IEETAL TNLEA
Sbjct: 456 ARFQVESYLGAMFNPTVQLKSGGYIVIGVTEALVAIDVNSGRATKEGSIEETALKTNLEA 515

Query: 326 ADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLE 385
           A+E+ARQLRLRDL GL+VIDFIDM   ++   VE R+++ ++ DRAR+Q+GRIS FGL+E
Sbjct: 516 AEEVARQLRLRDLAGLIVIDFIDMDERKNNAAVEKRMKDKLKTDRARIQVGRISGFGLME 575

Query: 386 MSRQRLSPSLAEASHHICPRCKGTGVIRDNESLALSVLRLIEEEALKDNTSQVLAVVPVS 445
           MSRQRL P + EA+   CP C GTG+IR ++SLALS+LR IEEE  +  + +VL   PVS
Sbjct: 576 MSRQRLRPGMIEATTAPCPHCHGTGLIRSDDSLALSILRQIEEEGTRRRSREVLVRCPVS 635

Query: 446 IASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVREGEEQDVLSYLIPKKLE 505
           IA+YL+N+KR  I  IE    + + I  +  + +P F                     LE
Sbjct: 636 IANYLMNQKREHIAQIETRYGLSVRIEGDPHLVSPDF--------------------SLE 675

Query: 506 AMKEAEGKEVVDVELKP-KRIEEPVLKGFAAPAEAVPAPTPKPKAEPQPVAEVQQPAQPG 564
             K A    VV V   P   ++  ++    A   +  A   + +A    VAEVQ     G
Sbjct: 676 KFKTA--SRVVPVATAPVVSVDTSIMDQVDADEASDEADEAEVEANDTDVAEVQAAGDEG 733

Query: 565 FFSRVFKAIASLFSATPEAAKVEAPVTQNSEQDKPRRERNDRNNDRRRNPRDKNRRRGNE 624
                                       +++  + RR R  R +         N  +G+ 
Sbjct: 734 --------------------------EGDNKPKRKRRRRRRRKSSGADGDDSNNTAQGDA 767

Query: 625 ENNERNDKETSNSNRKPQERKPKQERGERNERNDRNERPETERPERQDRRNKRDESKTAK 684
             +++   + + ++    + +P +    +    D   +  T    R   R KR +   A 
Sbjct: 768 NADDQKASDDAAADDADAQAEPAEGSDAKEAEGDGEVKKRTRTRTRSRSRKKRTDETVAA 827

Query: 685 LLEQGRQLAAEAQQEVKAV--EPKEEKA------AVVKERRQRRKLSKQIRVKDQLAAEE 736
             E   +  A+A+ E +A+  E K E +      A V       + +++  V +  AA E
Sbjct: 828 EAEAPAETDAKAEPEGQAIVTEAKAEDSNAAESEAPVASAEAPVEGAEEPAVLNGDAAAE 887

Query: 737 LDNLSTAPVDNAFDAPAPVNLPVTDDFADSAQEDNE 772
           +   + A    A +  AP  +   +  A+    D +
Sbjct: 888 VPAAAEAETAAATEEAAPAQIVADEATAEDVVADQD 923



 Score = 86.7 bits (213), Expect = 8e-21
 Identities = 40/77 (51%), Positives = 52/77 (67%)

Query: 2  KRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYG 61
          K+MLI+AT  EE RV +VDG ++ + D ES        NIY  ++TR+EPSL+AAFVDYG
Sbjct: 3  KKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVDYG 62

Query: 62 AERHGFLPLKEIAREYF 78
            RHGFL   EI  +Y+
Sbjct: 63 GNRHGFLAFSEIHPDYY 79