Pairwise Alignments
Query, 1052 a.a., ribonuclease E from Vibrio cholerae E7946 ATCC 55056
Subject, 1128 a.a., ribonuclease (RefSeq) from Shewanella loihica PV-4
Score = 917 bits (2371), Expect = 0.0
Identities = 554/1130 (49%), Positives = 704/1130 (62%), Gaps = 122/1130 (10%)
Query: 1 MKRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDY 60
MKRMLINATQ EELRVALVDGQ+L+DLDIESPGHE KKANIYKG+ITR+EPSLEAAFVDY
Sbjct: 1 MKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY 60
Query: 61 GAERHGFLPLKEIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFI 120
GAERHGFLPLKEIAREYFP GYS+QGRPNIK+V+ EGQEVIVQI+KEERG+KGAALTTFI
Sbjct: 61 GAERHGFLPLKEIAREYFPKGYSFQGRPNIKEVVKEGQEVIVQIDKEERGNKGAALTTFI 120
Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLELPQGMGLIVRTAGVGKSAEEL 180
SLAGSYLVLMPNNPRAGGISRRIEGDERTELK+A+S LE+PQGMGLIVRTAGVGK A EL
Sbjct: 121 SLAGSYLVLMPNNPRAGGISRRIEGDERTELKAAMSELEVPQGMGLIVRTAGVGKDAAEL 180
Query: 181 EWDLNVLLKHWSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERA 240
+WDL VL HW+AI++A+ + PAPFLIHQESNVIVRAIRDYLRRD+GE+LID IYE+A
Sbjct: 181 KWDLKVLQHHWAAIEEAAQNRPAPFLIHQESNVIVRAIRDYLRRDVGEVLIDHQRIYEQA 240
Query: 241 LEHIRLVRPDFVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTS 300
+H+ LVRPDFV+R+K+YE EVPLF+HFQIE+QIESAFQREVRLPSGGSIVIDPTEALTS
Sbjct: 241 KQHVALVRPDFVDRIKRYEAEVPLFTHFQIETQIESAFQREVRLPSGGSIVIDPTEALTS 300
Query: 301 IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN 360
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
Sbjct: 301 IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN 360
Query: 361 RLREAVRVDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLAL 420
R+R+AV DRARVQ+GRISRFGL+EMSRQRL PSL E++ H+CPRC G G IR ESLAL
Sbjct: 361 RMRDAVHHDRARVQLGRISRFGLMEMSRQRLRPSLEESAAHLCPRCHGQGTIRGTESLAL 420
Query: 421 SVLRLIEEEALKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETP 480
S+LRL+EEEA+K+NTSQ+ A+VPV +A++LLNEKR++I E+ V + ++P+ +M TP
Sbjct: 421 SILRLMEEEAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITEQRHDVEVYVIPDPNMTTP 480
Query: 481 HFEVIRVREGEEQDVLSYLIPKKLEAMKEAEGKEVVDVELKPKRIEEPVLKGFAAPAEAV 540
+ V R R+ ++ SY + +++ E K +L+ EP LKGF+ P +
Sbjct: 481 DYRVTRHRKDDQISESSY------KLLEQPESKLYEPRKLERAASPEPALKGFSTPVKDA 534
Query: 541 PAPTPKPKAEPQPVAEVQQPAQPGFFSRVFKAIASLFSATPEAAKVEAPVTQNSEQDKPR 600
P +A P P ++ +PG +++F AI LF PE K E ++++PR
Sbjct: 535 PT-----QAAPAPAKPAEKAQEPGLIAKLFAAIGKLFGGEPEQPKEEV------KKEQPR 583
Query: 601 RERNDRNNDR--RRNPRDKNRRRGNEENNERN-----DKETSNSNRKPQERKPKQERGER 653
R +RN+ R RRN K+R G E +N+R+ D S S + E++ K++R ++
Sbjct: 584 RNAQNRNSRRNNRRNDTRKSRDEGKETDNKRSRSAKPDDADSRSAKSRNEKRQKRDRDDK 643
Query: 654 NERNDRNERPETERP------ERQDRRNKRDESKTAKLLEQGRQLAAEAQQEVKAVE--- 704
+ ++ + ++P ER+ RRN R + + ++ +QLA EA ++ E
Sbjct: 644 PQSQSKDTESQAQQPKQEAARERRQRRNMRRKVR----VQSEQQLADEAALAIEVAEKAN 699
Query: 705 ------PKEEKAAVVKERRQRR-------KLSKQIRVKDQLAAEELDNLSTAPVDNAFDA 751
P E A K +RQ+R K K +++++ AE++ + TA A +
Sbjct: 700 DEQVQVPAAEATADDKPQRQKRQPRKSKPKQDKADKLEEETQAEQVADEDTASEQPAVET 759
Query: 752 PA---PVNLPVT---DDFADSAQ-------------EDNEQDDQKQRRNRRSPRHLRASG 792
A P + VT + AD AQ E + + QRR+RRSPRHLRA+G
Sbjct: 760 QAANEPKDTEVTTQVEAHADEAQAEEASAQPQEGESEGKREPREGQRRSRRSPRHLRAAG 819
Query: 793 QRRRR-----GRDRRPNPFRLRKGGVASPEMA-----MGKVMPRYDLAPRPQSRHETA-E 841
QRRRR G P + +P + G V+ + E +
Sbjct: 820 QRRRRDEEGNGEVNNGEPAFIPNEVETAPLLGEQLEQEGSVVEAVSEVQATATEQEAVKQ 879
Query: 842 GAQHVTHVTPTAATAVVESEKVAAPRVLGGVAFPEMAM-------------GKVIVRRET 888
A VT V T T +E A A E + KV ET
Sbjct: 880 EADEVTTVAETTVTETTVTETTVAEEAPAKAAAEEASQEESKPKPRRRAPKAKVASEEET 939
Query: 889 A---AVQPEPVVQE--PVITDVIAETLIAPVEPVVVEATVIEAPVIEE---SATETAALE 940
+ A Q P+ E + + + L P V+A+ AP E+ A E AA+E
Sbjct: 940 SVEEAQQSLPLAGEAKASLKEEVQAELDLTSTPEEVKASQEAAPQAEDVAAQAEEPAAVE 999
Query: 941 TVVAKVAEVEEPATISDEVVAQTTVEVIADKMAEPIKVVKPVTVSATSLTAKAVIQQPYA 1000
T + EV E A+T + A + KP V A + K
Sbjct: 1000 TAPVETPEV--------ETEAKTEAPAAKESSAASAPMAKPAAVPAPTAKVK-------P 1044
Query: 1001 SSPMTKAPGSDDIREVQVNAAPLRAERYQARGAGSQVARNQASAGMSKPQ 1050
++ + P D E + A A + +R GS V S+ M+KP+
Sbjct: 1045 AAKVEATPAEDKPEETASDEAEKPAPKATSR-FGSMV-----SSTMTKPE 1088