Pairwise Alignments

Query, 1052 a.a., ribonuclease E from Vibrio cholerae E7946 ATCC 55056

Subject, 920 a.a., ribonuclease, Rne/Rng family from Dechlorosoma suillum PS

 Score =  679 bits (1753), Expect = 0.0
 Identities = 424/993 (42%), Positives = 566/993 (56%), Gaps = 93/993 (9%)

Query: 1   MKRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDY 60
           MKRML NATQ EELRVA+VDGQ+L DLDIES   E +K+NIYKG ITRIEPSLEA FV+Y
Sbjct: 1   MKRMLFNATQAEELRVAIVDGQKLIDLDIESAAKEQRKSNIYKGVITRIEPSLEACFVNY 60

Query: 61  GAERHGFLPLKEIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFI 120
           G ERHGFLP KE++R YF  G     R +IK+ L EGQEVIVQ+EK+ERG+KGAALTTF+
Sbjct: 61  GEERHGFLPFKEVSRSYFQPGVD--NRASIKEALKEGQEVIVQVEKDERGNKGAALTTFV 118

Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLELPQGMGLIVRTAGVGKSAEEL 180
           SLAG YLVLMPNNPR GG+SRR+EGDER EL+  +  L++P GM LI RTA +G++AEEL
Sbjct: 119 SLAGRYLVLMPNNPRGGGVSRRVEGDERAELRDVMDQLQVPGGMSLIARTAAIGRNAEEL 178

Query: 181 EWDLNVLLKHWSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERA 240
           +WDLN LLK W AI+ A+ S   PFLI+ E ++++RAIRDY + DIGEILID++ I+E+A
Sbjct: 179 QWDLNYLLKLWEAIEGAATSQSGPFLIYLEGSLVIRAIRDYFQPDIGEILIDTDEIFEQA 238

Query: 241 LEHIRLVRPDFVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTS 300
              +  V P   NRVK Y  +VPLFS FQIE QIESA+ R+V LPSGG+IVID TEAL S
Sbjct: 239 RSFMGTVMPANENRVKLYRDDVPLFSRFQIEHQIESAYSRQVNLPSGGAIVIDHTEALVS 298

Query: 301 IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN 360
           +D+NS R+T+G DIEETAL TN EAADEIARQLRLRDLGGL+VIDFIDM   ++QREVEN
Sbjct: 299 VDVNSGRSTRGQDIEETALKTNQEAADEIARQLRLRDLGGLIVIDFIDMESQKNQREVEN 358

Query: 361 RLREAVRVDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLAL 420
           RLR+A+R DRARVQ+G+ISRFGL+E+SRQRL P+LAE S+  CPRC GTG IR  ES AL
Sbjct: 359 RLRDALRHDRARVQMGKISRFGLMELSRQRLRPALAETSYIPCPRCTGTGHIRSTESAAL 418

Query: 421 SVLRLIEEEALKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETP 480
            +LR++EEEA+KDNT+ V   VPV +A++LLNEKR  I  IE   +V I ++PN  +ETP
Sbjct: 419 HILRILEEEAMKDNTAAVHTQVPVDVATFLLNEKRPDIQAIELRHKVTILLIPNVHLETP 478

Query: 481 HFEVIRVREGEEQDVLSYLIPKKLEAMKEAEGKEVVDVELKPKRIEEPVLKGFAAPAEAV 540
              + R+R  +  +        ++  M   E K++ + + + ++  +        P +  
Sbjct: 479 AHTIQRLRHDDLNNEDVQQPSYRMMEMPAEEVKQLANAQSEARQPRQEAAIKHITPEQPA 538

Query: 541 PAPTPKPKAEPQPVAEVQQPAQPGFFSRVFKAIA--SLFSATPEAAKVEAPVTQNSEQDK 598
           P    KP A P   +E       G   ++F           TPE A              
Sbjct: 539 PVVAEKPAAAPVAKSE-------GIIGKIFSWFRGNKTVEPTPEPAAT------------ 579

Query: 599 PRRERNDRNNDRRRNPRDKNRRRGNEENNERNDKETSNSNRKPQERKPKQERGERNERND 658
           PR+ R  R+  + R    + R RG +    R +       R   ER  +  RGE    N 
Sbjct: 580 PRKGRGQRSEGQGRG-EQRGRGRGEQRGRGRGE---GAEGRNGGERGERPTRGETQGDNA 635

Query: 659 RNERPETERPERQDRRNKRDESKTAKLLEQGRQLAAEAQQEVKAVEPKEEKAAVVKERRQ 718
           R ++P   R +R DR ++  E   A             Q + +  E + E+    +ER+ 
Sbjct: 636 REQQPREGRRQRGDRGDRNGERNNA------------VQADNERGEQQNEQRKERRERQP 683

Query: 719 RRKLSKQIRVKDQLAAEELDNLSTAPVDNAFDAPAPVNLPVTDDFADSAQEDNEQDDQKQ 778
           RR+ + + + +  +AA + D L+T     A +  AP                  Q D++ 
Sbjct: 684 RRERNSEDKAQQAVAA-QADALNTQAAGTAPEQAAP------------------QGDEEG 724

Query: 779 RRNRRSPRHLRASGQRRRRGRDRRPNPFRLRKGGVASPEMAMGKVMPRYDLAPRPQSRHE 838
            R RR  R+      RR RG  R+ N              A G+V      A    S+ +
Sbjct: 725 GRGRRGRRN-----NRRDRGERRQENG-------------AEGEVQQN---AVTEVSQEQ 763

Query: 839 TAEGAQHVTHVTPTAATAVVESEKVAAPRVLGGVAFPEMAMGKVIVRRETAAVQPEPVVQ 898
               A  V  V        V + +  AP V    +  E+A    +     AAV+      
Sbjct: 764 APVIAAAVVEVANPVEPVAVAAVEAVAPTVAVVESAAEVA--PAVEEAPAAAVEAAIPEA 821

Query: 899 EPVITDVIAETLIAPVEPVVVEATVIEAPVIEESATETAALETVVAKVAEVEEPATI--- 955
            PV   V  E ++APVE  V+         +E  A   A ++ VVA + +  E + +   
Sbjct: 822 APV---VAVEEVVAPVEEQVIPT---PPRAVEPIAVPPAEIKPVVANIDQALEASGLVMV 875

Query: 956 --SDEVVAQTTVEVIADKMAEPIKV-VKPVTVS 985
             S +   Q    V+ +++  P +    PV +S
Sbjct: 876 ETSADKARQVQAAVVENEVPRPRRTRPAPVVIS 908